miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31461 3' -38.9 NC_006649.1 + 31641 0.69 0.999938
Target:  5'- uUCCcAUAA-AUUAUGGGAAcuGUUCCc -3'
miRNA:   3'- -AGGaUAUUaUAAUAUCCUUacCAAGG- -5'
31461 3' -38.9 NC_006649.1 + 31392 0.69 0.999938
Target:  5'- uUCC-AUAAUAUUAU-GGAAUuaGUUCCc -3'
miRNA:   3'- -AGGaUAUUAUAAUAuCCUUAc-CAAGG- -5'
31461 3' -38.9 NC_006649.1 + 8882 0.69 0.99988
Target:  5'- cCCUucaGAUuUUAUGGGuuUGGUUCUc -3'
miRNA:   3'- aGGAua-UUAuAAUAUCCuuACCAAGG- -5'
31461 3' -38.9 NC_006649.1 + 5614 0.7 0.999488
Target:  5'- uUCCcAUAAUuUUAUGGGAAcaGUUCCc -3'
miRNA:   3'- -AGGaUAUUAuAAUAUCCUUacCAAGG- -5'
31461 3' -38.9 NC_006649.1 + 31687 0.7 0.999488
Target:  5'- uUCCcAUAAUuUUAUGGGAAcaGUUCCc -3'
miRNA:   3'- -AGGaUAUUAuAAUAUCCUUacCAAGG- -5'
31461 3' -38.9 NC_006649.1 + 31614 0.71 0.998619
Target:  5'- uUCCUAUAAUugccUGGGAAcuGUUCCc -3'
miRNA:   3'- -AGGAUAUUAuaauAUCCUUacCAAGG- -5'
31461 3' -38.9 NC_006649.1 + 31598 0.72 0.998268
Target:  5'- uUCCUAga--AUUAUGGGAAcaGUUCCu -3'
miRNA:   3'- -AGGAUauuaUAAUAUCCUUacCAAGG- -5'
31461 3' -38.9 NC_006649.1 + 5477 0.75 0.98222
Target:  5'- uUUCUAUAAUAgUAUAGGAAUuaUUCCu -3'
miRNA:   3'- -AGGAUAUUAUaAUAUCCUUAccAAGG- -5'
31461 3' -38.9 NC_006649.1 + 31347 0.75 0.98222
Target:  5'- uUUCUAUAAUAgUAUAGGAAUuaUUCCu -3'
miRNA:   3'- -AGGAUAUUAUaAUAUCCUUAccAAGG- -5'
31461 3' -38.9 NC_006649.1 + 5564 0.77 0.957243
Target:  5'- uUCCcAUAAaAUUAUGGGAAUaGUUCCc -3'
miRNA:   3'- -AGGaUAUUaUAAUAUCCUUAcCAAGG- -5'
31461 3' -38.9 NC_006649.1 + 31571 0.77 0.952334
Target:  5'- uUCCUAUA--AUUAUGGGAAcaGUUCCc -3'
miRNA:   3'- -AGGAUAUuaUAAUAUCCUUacCAAGG- -5'
31461 3' -38.9 NC_006649.1 + 31301 0.78 0.935397
Target:  5'- uUCCcAUAAUggUAUAGGAAUaGUUCCc -3'
miRNA:   3'- -AGGaUAUUAuaAUAUCCUUAcCAAGG- -5'
31461 3' -38.9 NC_006649.1 + 5431 0.78 0.935397
Target:  5'- uUCCcAUAAUggUAUAGGAAUaGUUCCc -3'
miRNA:   3'- -AGGaUAUUAuaAUAUCCUUAcCAAGG- -5'
31461 3' -38.9 NC_006649.1 + 31480 0.79 0.915061
Target:  5'- uUCCcAUAAUAgUAUAGGAAUaGUUCCc -3'
miRNA:   3'- -AGGaUAUUAUaAUAUCCUUAcCAAGG- -5'
31461 3' -38.9 NC_006649.1 + 5523 0.8 0.873701
Target:  5'- uUCCcAUAAUAUUAUGGGAuuaGUUCCc -3'
miRNA:   3'- -AGGaUAUUAUAAUAUCCUuacCAAGG- -5'
31461 3' -38.9 NC_006649.1 + 31439 0.8 0.854692
Target:  5'- uUCCcAUAAUAUUAUAGGAAUaaUUCCu -3'
miRNA:   3'- -AGGaUAUUAUAAUAUCCUUAccAAGG- -5'
31461 3' -38.9 NC_006649.1 + 31527 0.81 0.844701
Target:  5'- cUCCUAUAAUugUAUAGGAAcuGUUCCc -3'
miRNA:   3'- -AGGAUAUUAuaAUAUCCUUacCAAGG- -5'
31461 3' -38.9 NC_006649.1 + 31344 0.85 0.641487
Target:  5'- uUCC-AUAAUAUUAUGGaAAUGGUUCCc -3'
miRNA:   3'- -AGGaUAUUAUAAUAUCcUUACCAAGG- -5'
31461 3' -38.9 NC_006649.1 + 31485 0.85 0.641487
Target:  5'- uUCCUAUAAUAgUAUAGGAAUGaUUCUu -3'
miRNA:   3'- -AGGAUAUUAUaAUAUCCUUACcAAGG- -5'
31461 3' -38.9 NC_006649.1 + 5569 0.92 0.328214
Target:  5'- uUCCUAUAAUAUUAUAGGAAUaaUUCCu -3'
miRNA:   3'- -AGGAUAUUAUAAUAUCCUUAccAAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.