Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
31461 | 3' | -38.9 | NC_006649.1 | + | 5473 | 0.94 | 0.259525 |
Target: 5'- aUCCcAUAAUAUUAUGGGAAUGGUaCCu -3' miRNA: 3'- -AGGaUAUUAUAAUAUCCUUACCAaGG- -5' |
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31461 | 3' | -38.9 | NC_006649.1 | + | 31251 | 0.94 | 0.259525 |
Target: 5'- uUCCUAUAccAUUAUGGGAAUGGUuUCCa -3' miRNA: 3'- -AGGAUAUuaUAAUAUCCUUACCA-AGG- -5' |
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31461 | 3' | -38.9 | NC_006649.1 | + | 31435 | 1 | 0.13396 |
Target: 5'- uUCCUAUAcUAUUAUAGGAAUGGUuUCCa -3' miRNA: 3'- -AGGAUAUuAUAAUAUCCUUACCA-AGG- -5' |
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31461 | 3' | -38.9 | NC_006649.1 | + | 5381 | 1.02 | 0.102936 |
Target: 5'- uUCCUAUAccAUUAUGGGAAUGGUUCCc -3' miRNA: 3'- -AGGAUAUuaUAAUAUCCUUACCAAGG- -5' |
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31461 | 3' | -38.9 | NC_006649.1 | + | 31530 | 1.06 | 0.056132 |
Target: 5'- uUCCUAUAcUAUUAUGGGAAUGGUUCCc -3' miRNA: 3'- -AGGAUAUuAUAAUAUCCUUACCAAGG- -5' |
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31461 | 3' | -38.9 | NC_006649.1 | + | 31389 | 1.16 | 0.015651 |
Target: 5'- uUCCUAUAAUAUUAUGGGAAUGGUUCCc -3' miRNA: 3'- -AGGAUAUUAUAAUAUCCUUACCAAGG- -5' |
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31461 | 3' | -38.9 | NC_006649.1 | + | 5519 | 1.16 | 0.014098 |
Target: 5'- uUCCUAUAAUAUUAUAGGAAUGGUUCCc -3' miRNA: 3'- -AGGAUAUUAUAAUAUCCUUACCAAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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