Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31461 | 3' | -38.9 | NC_006649.1 | + | 5381 | 1.02 | 0.102936 |
Target: 5'- uUCCUAUAccAUUAUGGGAAUGGUUCCc -3' miRNA: 3'- -AGGAUAUuaUAAUAUCCUUACCAAGG- -5' |
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31461 | 3' | -38.9 | NC_006649.1 | + | 5431 | 0.78 | 0.935397 |
Target: 5'- uUCCcAUAAUggUAUAGGAAUaGUUCCc -3' miRNA: 3'- -AGGaUAUUAuaAUAUCCUUAcCAAGG- -5' |
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31461 | 3' | -38.9 | NC_006649.1 | + | 5473 | 0.94 | 0.259525 |
Target: 5'- aUCCcAUAAUAUUAUGGGAAUGGUaCCu -3' miRNA: 3'- -AGGaUAUUAUAAUAUCCUUACCAaGG- -5' |
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31461 | 3' | -38.9 | NC_006649.1 | + | 5477 | 0.75 | 0.98222 |
Target: 5'- uUUCUAUAAUAgUAUAGGAAUuaUUCCu -3' miRNA: 3'- -AGGAUAUUAUaAUAUCCUUAccAAGG- -5' |
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31461 | 3' | -38.9 | NC_006649.1 | + | 5519 | 1.16 | 0.014098 |
Target: 5'- uUCCUAUAAUAUUAUAGGAAUGGUUCCc -3' miRNA: 3'- -AGGAUAUUAUAAUAUCCUUACCAAGG- -5' |
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31461 | 3' | -38.9 | NC_006649.1 | + | 5523 | 0.8 | 0.873701 |
Target: 5'- uUCCcAUAAUAUUAUGGGAuuaGUUCCc -3' miRNA: 3'- -AGGaUAUUAUAAUAUCCUuacCAAGG- -5' |
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31461 | 3' | -38.9 | NC_006649.1 | + | 5564 | 0.77 | 0.957243 |
Target: 5'- uUCCcAUAAaAUUAUGGGAAUaGUUCCc -3' miRNA: 3'- -AGGaUAUUaUAAUAUCCUUAcCAAGG- -5' |
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31461 | 3' | -38.9 | NC_006649.1 | + | 5569 | 0.92 | 0.328214 |
Target: 5'- uUCCUAUAAUAUUAUAGGAAUaaUUCCu -3' miRNA: 3'- -AGGAUAUUAUAAUAUCCUUAccAAGG- -5' |
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31461 | 3' | -38.9 | NC_006649.1 | + | 5614 | 0.7 | 0.999488 |
Target: 5'- uUCCcAUAAUuUUAUGGGAAcaGUUCCc -3' miRNA: 3'- -AGGaUAUUAuAAUAUCCUUacCAAGG- -5' |
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31461 | 3' | -38.9 | NC_006649.1 | + | 8882 | 0.69 | 0.99988 |
Target: 5'- cCCUucaGAUuUUAUGGGuuUGGUUCUc -3' miRNA: 3'- aGGAua-UUAuAAUAUCCuuACCAAGG- -5' |
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31461 | 3' | -38.9 | NC_006649.1 | + | 31251 | 0.94 | 0.259525 |
Target: 5'- uUCCUAUAccAUUAUGGGAAUGGUuUCCa -3' miRNA: 3'- -AGGAUAUuaUAAUAUCCUUACCA-AGG- -5' |
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31461 | 3' | -38.9 | NC_006649.1 | + | 31301 | 0.78 | 0.935397 |
Target: 5'- uUCCcAUAAUggUAUAGGAAUaGUUCCc -3' miRNA: 3'- -AGGaUAUUAuaAUAUCCUUAcCAAGG- -5' |
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31461 | 3' | -38.9 | NC_006649.1 | + | 31344 | 0.85 | 0.641487 |
Target: 5'- uUCC-AUAAUAUUAUGGaAAUGGUUCCc -3' miRNA: 3'- -AGGaUAUUAUAAUAUCcUUACCAAGG- -5' |
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31461 | 3' | -38.9 | NC_006649.1 | + | 31347 | 0.75 | 0.98222 |
Target: 5'- uUUCUAUAAUAgUAUAGGAAUuaUUCCu -3' miRNA: 3'- -AGGAUAUUAUaAUAUCCUUAccAAGG- -5' |
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31461 | 3' | -38.9 | NC_006649.1 | + | 31389 | 1.16 | 0.015651 |
Target: 5'- uUCCUAUAAUAUUAUGGGAAUGGUUCCc -3' miRNA: 3'- -AGGAUAUUAUAAUAUCCUUACCAAGG- -5' |
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31461 | 3' | -38.9 | NC_006649.1 | + | 31392 | 0.69 | 0.999938 |
Target: 5'- uUCC-AUAAUAUUAU-GGAAUuaGUUCCc -3' miRNA: 3'- -AGGaUAUUAUAAUAuCCUUAc-CAAGG- -5' |
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31461 | 3' | -38.9 | NC_006649.1 | + | 31435 | 1 | 0.13396 |
Target: 5'- uUCCUAUAcUAUUAUAGGAAUGGUuUCCa -3' miRNA: 3'- -AGGAUAUuAUAAUAUCCUUACCA-AGG- -5' |
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31461 | 3' | -38.9 | NC_006649.1 | + | 31439 | 0.8 | 0.854692 |
Target: 5'- uUCCcAUAAUAUUAUAGGAAUaaUUCCu -3' miRNA: 3'- -AGGaUAUUAUAAUAUCCUUAccAAGG- -5' |
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31461 | 3' | -38.9 | NC_006649.1 | + | 31480 | 0.79 | 0.915061 |
Target: 5'- uUCCcAUAAUAgUAUAGGAAUaGUUCCc -3' miRNA: 3'- -AGGaUAUUAUaAUAUCCUUAcCAAGG- -5' |
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31461 | 3' | -38.9 | NC_006649.1 | + | 31485 | 0.85 | 0.641487 |
Target: 5'- uUCCUAUAAUAgUAUAGGAAUGaUUCUu -3' miRNA: 3'- -AGGAUAUUAUaAUAUCCUUACcAAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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