Results 21 - 27 of 27 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31461 | 3' | -38.9 | NC_006649.1 | + | 5477 | 0.75 | 0.98222 |
Target: 5'- uUUCUAUAAUAgUAUAGGAAUuaUUCCu -3' miRNA: 3'- -AGGAUAUUAUaAUAUCCUUAccAAGG- -5' |
|||||||
31461 | 3' | -38.9 | NC_006649.1 | + | 31598 | 0.72 | 0.998268 |
Target: 5'- uUCCUAga--AUUAUGGGAAcaGUUCCu -3' miRNA: 3'- -AGGAUauuaUAAUAUCCUUacCAAGG- -5' |
|||||||
31461 | 3' | -38.9 | NC_006649.1 | + | 31687 | 0.7 | 0.999488 |
Target: 5'- uUCCcAUAAUuUUAUGGGAAcaGUUCCc -3' miRNA: 3'- -AGGaUAUUAuAAUAUCCUUacCAAGG- -5' |
|||||||
31461 | 3' | -38.9 | NC_006649.1 | + | 5614 | 0.7 | 0.999488 |
Target: 5'- uUCCcAUAAUuUUAUGGGAAcaGUUCCc -3' miRNA: 3'- -AGGaUAUUAuAAUAUCCUUacCAAGG- -5' |
|||||||
31461 | 3' | -38.9 | NC_006649.1 | + | 31392 | 0.69 | 0.999938 |
Target: 5'- uUCC-AUAAUAUUAU-GGAAUuaGUUCCc -3' miRNA: 3'- -AGGaUAUUAUAAUAuCCUUAc-CAAGG- -5' |
|||||||
31461 | 3' | -38.9 | NC_006649.1 | + | 31641 | 0.69 | 0.999938 |
Target: 5'- uUCCcAUAA-AUUAUGGGAAcuGUUCCc -3' miRNA: 3'- -AGGaUAUUaUAAUAUCCUUacCAAGG- -5' |
|||||||
31461 | 3' | -38.9 | NC_006649.1 | + | 31530 | 1.06 | 0.056132 |
Target: 5'- uUCCUAUAcUAUUAUGGGAAUGGUUCCc -3' miRNA: 3'- -AGGAUAUuAUAAUAUCCUUACCAAGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home