miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31461 5' -42.4 NC_006649.1 + 31672 0.68 0.994661
Target:  5'- -nGGAACaGUUCCCAggcAAUUAUaGGa -3'
miRNA:   3'- acCCUUGaCAAGGGUauuUUAAUA-CC- -5'
31461 5' -42.4 NC_006649.1 + 5510 0.69 0.992458
Target:  5'- aUGGGAuuaGUUCCCAUAAuaaUGUaGGa -3'
miRNA:   3'- -ACCCUugaCAAGGGUAUUuuaAUA-CC- -5'
31461 5' -42.4 NC_006649.1 + 31332 0.7 0.983758
Target:  5'- -aGGAAUUaUUCCUAUAGcAUUAUGGa -3'
miRNA:   3'- acCCUUGAcAAGGGUAUUuUAAUACC- -5'
31461 5' -42.4 NC_006649.1 + 5441 0.71 0.960995
Target:  5'- aUGGGAACcaUUCCCAUAAuggUAUaGGa -3'
miRNA:   3'- -ACCCUUGacAAGGGUAUUuuaAUA-CC- -5'
31461 5' -42.4 NC_006649.1 + 31470 0.71 0.960995
Target:  5'- aUGGGAACcaUUCCCAUAAuagUAUaGGa -3'
miRNA:   3'- -ACCCUUGacAAGGGUAUUuuaAUA-CC- -5'
31461 5' -42.4 NC_006649.1 + 31402 0.72 0.940979
Target:  5'- aUGGGAAUgGUUCCCAUAAu------- -3'
miRNA:   3'- -ACCCUUGaCAAGGGUAUUuuaauacc -5'
31461 5' -42.4 NC_006649.1 + 5599 0.74 0.883905
Target:  5'- -nGGAACaGUUCCCAggc-AUUAUGGg -3'
miRNA:   3'- acCCUUGaCAAGGGUauuuUAAUACC- -5'
31461 5' -42.4 NC_006649.1 + 31449 0.77 0.760533
Target:  5'- aUGGGAACcaUUCCCAUAAuAUUAUaGGa -3'
miRNA:   3'- -ACCCUUGacAAGGGUAUUuUAAUA-CC- -5'
31461 5' -42.4 NC_006649.1 + 31542 0.77 0.748762
Target:  5'- -aGGAACUGUUCCCAUAAuucua-GGa -3'
miRNA:   3'- acCCUUGACAAGGGUAUUuuaauaCC- -5'
31461 5' -42.4 NC_006649.1 + 31403 0.79 0.650455
Target:  5'- aUGGGAACcaUUUCCAUAAuAUUAUGGa -3'
miRNA:   3'- -ACCCUUGacAAGGGUAUUuUAAUACC- -5'
31461 5' -42.4 NC_006649.1 + 31587 0.81 0.538366
Target:  5'- aUGGGAACaGUUCCUAUAcAAUUAUaGGa -3'
miRNA:   3'- -ACCCUUGaCAAGGGUAUuUUAAUA-CC- -5'
31461 5' -42.4 NC_006649.1 + 31333 0.83 0.444669
Target:  5'- aUGGGAACUaaUUCCAUAAuAUUAUGGa -3'
miRNA:   3'- -ACCCUUGAcaAGGGUAUUuUAAUACC- -5'
31461 5' -42.4 NC_006649.1 + 31241 0.84 0.401357
Target:  5'- aUGGGAACUaUUCCUAUAccAUUAUGGg -3'
miRNA:   3'- -ACCCUUGAcAAGGGUAUuuUAAUACC- -5'
31461 5' -42.4 NC_006649.1 + 5371 0.84 0.401357
Target:  5'- aUGGGAACUaUUCCUAUAccAUUAUGGg -3'
miRNA:   3'- -ACCCUUGAcAAGGGUAUuuUAAUACC- -5'
31461 5' -42.4 NC_006649.1 + 31517 0.89 0.214982
Target:  5'- aUGGGAAUgGUUCCCAU-AAAUUAUGGa -3'
miRNA:   3'- -ACCCUUGaCAAGGGUAuUUUAAUACC- -5'
31461 5' -42.4 NC_006649.1 + 31697 0.91 0.184581
Target:  5'- aUGGaAACUGUUCCCAUAAuuUUAUGGg -3'
miRNA:   3'- -ACCcUUGACAAGGGUAUUuuAAUACC- -5'
31461 5' -42.4 NC_006649.1 + 5463 0.91 0.184581
Target:  5'- aUGGGAACUaaUCCCAUAAuAUUAUGGg -3'
miRNA:   3'- -ACCCUUGAcaAGGGUAUUuUAAUACC- -5'
31461 5' -42.4 NC_006649.1 + 31582 0.91 0.168217
Target:  5'- aUGGGAACaGUUCCCAUAAu-UUAUGGg -3'
miRNA:   3'- -ACCCUUGaCAAGGGUAUUuuAAUACC- -5'
31461 5' -42.4 NC_006649.1 + 5624 0.92 0.143818
Target:  5'- aUGGGAACUaUUCCCAUAAuuUUAUGGg -3'
miRNA:   3'- -ACCCUUGAcAAGGGUAUUuuAAUACC- -5'
31461 5' -42.4 NC_006649.1 + 31629 0.93 0.134996
Target:  5'- aUGGGAACUGUUCCCAUA--AUUAUaGGa -3'
miRNA:   3'- -ACCCUUGACAAGGGUAUuuUAAUA-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.