miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31464 3' -40.9 NC_006649.1 + 31691 0.66 0.999974
Target:  5'- aCUGUuccCAUaauuuUAUGGGAAC-AGUUCCc -3'
miRNA:   3'- gGAUAca-GUA-----AUACCCUUGaUUAAGG- -5'
31464 3' -40.9 NC_006649.1 + 5552 0.68 0.999571
Target:  5'- gCCUGggaacUGUUcccauaaaAUUAUGGGAA-UAGUUCCc -3'
miRNA:   3'- -GGAU-----ACAG--------UAAUACCCUUgAUUAAGG- -5'
31464 3' -40.9 NC_006649.1 + 31625 0.69 0.998545
Target:  5'- gCCUGggaacUGUUcccauaaaAUUAUGGGAACaguUUCCa -3'
miRNA:   3'- -GGAU-----ACAG--------UAAUACCCUUGauuAAGG- -5'
31464 3' -40.9 NC_006649.1 + 31645 0.69 0.997757
Target:  5'- aCUAUucccauaaAUUAUGGGAACU-GUUCCc -3'
miRNA:   3'- gGAUAcag-----UAAUACCCUUGAuUAAGG- -5'
31464 3' -40.9 NC_006649.1 + 5604 0.7 0.996007
Target:  5'- uUUAUGggaacaguucccaggCAUUAUGGGAACc-AUUCCu -3'
miRNA:   3'- gGAUACa--------------GUAAUACCCUUGauUAAGG- -5'
31464 3' -40.9 NC_006649.1 + 31461 0.71 0.990321
Target:  5'- uCUUAUagCAUUAUGGGAACc-AUUCCc -3'
miRNA:   3'- -GGAUAcaGUAAUACCCUUGauUAAGG- -5'
31464 3' -40.9 NC_006649.1 + 31529 0.72 0.988685
Target:  5'- uCCUAUacUAUUAUGGGAA-UGGUUCCc -3'
miRNA:   3'- -GGAUAcaGUAAUACCCUUgAUUAAGG- -5'
31464 3' -40.9 NC_006649.1 + 31390 0.74 0.953788
Target:  5'- uCCUAUaaUAUUAUGGGAA-UGGUUCCc -3'
miRNA:   3'- -GGAUAcaGUAAUACCCUUgAUUAAGG- -5'
31464 3' -40.9 NC_006649.1 + 5382 0.76 0.918184
Target:  5'- uCCUAUacCAUUAUGGGAA-UGGUUCCc -3'
miRNA:   3'- -GGAUAcaGUAAUACCCUUgAUUAAGG- -5'
31464 3' -40.9 NC_006649.1 + 31572 0.77 0.887266
Target:  5'- uCCUAUa--AUUAUGGGAAC-AGUUCCc -3'
miRNA:   3'- -GGAUAcagUAAUACCCUUGaUUAAGG- -5'
31464 3' -40.9 NC_006649.1 + 31252 0.77 0.878667
Target:  5'- uCCUAUacCAUUAUGGGAAUgguUUCCa -3'
miRNA:   3'- -GGAUAcaGUAAUACCCUUGauuAAGG- -5'
31464 3' -40.9 NC_006649.1 + 31597 0.77 0.878667
Target:  5'- uCCUAga--AUUAUGGGAAC-AGUUCCu -3'
miRNA:   3'- -GGAUacagUAAUACCCUUGaUUAAGG- -5'
31464 3' -40.9 NC_006649.1 + 5453 0.78 0.841042
Target:  5'- uCCUAUagCAUUAUGGGAACc-AUUCCc -3'
miRNA:   3'- -GGAUAcaGUAAUACCCUUGauUAAGG- -5'
31464 3' -40.9 NC_006649.1 + 31415 0.8 0.752972
Target:  5'- uCCUAUagCAUUAUGGGAACcauUUCCa -3'
miRNA:   3'- -GGAUAcaGUAAUACCCUUGauuAAGG- -5'
31464 3' -40.9 NC_006649.1 + 5451 0.82 0.629416
Target:  5'- uCCUAcaUUAUUAUGGGAACUAAUcCCa -3'
miRNA:   3'- -GGAUacAGUAAUACCCUUGAUUAaGG- -5'
31464 3' -40.9 NC_006649.1 + 31321 1.19 0.005611
Target:  5'- uCCUAUGUCAUUAUGGGAACUAAUUCCa -3'
miRNA:   3'- -GGAUACAGUAAUACCCUUGAUUAAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.