Results 1 - 16 of 16 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31464 | 3' | -40.9 | NC_006649.1 | + | 31321 | 1.19 | 0.005611 |
Target: 5'- uCCUAUGUCAUUAUGGGAACUAAUUCCa -3' miRNA: 3'- -GGAUACAGUAAUACCCUUGAUUAAGG- -5' |
|||||||
31464 | 3' | -40.9 | NC_006649.1 | + | 5451 | 0.82 | 0.629416 |
Target: 5'- uCCUAcaUUAUUAUGGGAACUAAUcCCa -3' miRNA: 3'- -GGAUacAGUAAUACCCUUGAUUAaGG- -5' |
|||||||
31464 | 3' | -40.9 | NC_006649.1 | + | 31415 | 0.8 | 0.752972 |
Target: 5'- uCCUAUagCAUUAUGGGAACcauUUCCa -3' miRNA: 3'- -GGAUAcaGUAAUACCCUUGauuAAGG- -5' |
|||||||
31464 | 3' | -40.9 | NC_006649.1 | + | 5453 | 0.78 | 0.841042 |
Target: 5'- uCCUAUagCAUUAUGGGAACc-AUUCCc -3' miRNA: 3'- -GGAUAcaGUAAUACCCUUGauUAAGG- -5' |
|||||||
31464 | 3' | -40.9 | NC_006649.1 | + | 31597 | 0.77 | 0.878667 |
Target: 5'- uCCUAga--AUUAUGGGAAC-AGUUCCu -3' miRNA: 3'- -GGAUacagUAAUACCCUUGaUUAAGG- -5' |
|||||||
31464 | 3' | -40.9 | NC_006649.1 | + | 31252 | 0.77 | 0.878667 |
Target: 5'- uCCUAUacCAUUAUGGGAAUgguUUCCa -3' miRNA: 3'- -GGAUAcaGUAAUACCCUUGauuAAGG- -5' |
|||||||
31464 | 3' | -40.9 | NC_006649.1 | + | 31572 | 0.77 | 0.887266 |
Target: 5'- uCCUAUa--AUUAUGGGAAC-AGUUCCc -3' miRNA: 3'- -GGAUAcagUAAUACCCUUGaUUAAGG- -5' |
|||||||
31464 | 3' | -40.9 | NC_006649.1 | + | 5382 | 0.76 | 0.918184 |
Target: 5'- uCCUAUacCAUUAUGGGAA-UGGUUCCc -3' miRNA: 3'- -GGAUAcaGUAAUACCCUUgAUUAAGG- -5' |
|||||||
31464 | 3' | -40.9 | NC_006649.1 | + | 31390 | 0.74 | 0.953788 |
Target: 5'- uCCUAUaaUAUUAUGGGAA-UGGUUCCc -3' miRNA: 3'- -GGAUAcaGUAAUACCCUUgAUUAAGG- -5' |
|||||||
31464 | 3' | -40.9 | NC_006649.1 | + | 31529 | 0.72 | 0.988685 |
Target: 5'- uCCUAUacUAUUAUGGGAA-UGGUUCCc -3' miRNA: 3'- -GGAUAcaGUAAUACCCUUgAUUAAGG- -5' |
|||||||
31464 | 3' | -40.9 | NC_006649.1 | + | 31461 | 0.71 | 0.990321 |
Target: 5'- uCUUAUagCAUUAUGGGAACc-AUUCCc -3' miRNA: 3'- -GGAUAcaGUAAUACCCUUGauUAAGG- -5' |
|||||||
31464 | 3' | -40.9 | NC_006649.1 | + | 5604 | 0.7 | 0.996007 |
Target: 5'- uUUAUGggaacaguucccaggCAUUAUGGGAACc-AUUCCu -3' miRNA: 3'- gGAUACa--------------GUAAUACCCUUGauUAAGG- -5' |
|||||||
31464 | 3' | -40.9 | NC_006649.1 | + | 31645 | 0.69 | 0.997757 |
Target: 5'- aCUAUucccauaaAUUAUGGGAACU-GUUCCc -3' miRNA: 3'- gGAUAcag-----UAAUACCCUUGAuUAAGG- -5' |
|||||||
31464 | 3' | -40.9 | NC_006649.1 | + | 31625 | 0.69 | 0.998545 |
Target: 5'- gCCUGggaacUGUUcccauaaaAUUAUGGGAACaguUUCCa -3' miRNA: 3'- -GGAU-----ACAG--------UAAUACCCUUGauuAAGG- -5' |
|||||||
31464 | 3' | -40.9 | NC_006649.1 | + | 5552 | 0.68 | 0.999571 |
Target: 5'- gCCUGggaacUGUUcccauaaaAUUAUGGGAA-UAGUUCCc -3' miRNA: 3'- -GGAU-----ACAG--------UAAUACCCUUgAUUAAGG- -5' |
|||||||
31464 | 3' | -40.9 | NC_006649.1 | + | 31691 | 0.66 | 0.999974 |
Target: 5'- aCUGUuccCAUaauuuUAUGGGAAC-AGUUCCc -3' miRNA: 3'- gGAUAca-GUA-----AUACCCUUGaUUAAGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home