miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31464 5' -45.2 NC_006649.1 + 31630 0.66 0.977184
Target:  5'- uAUGGGAAcuGUUCCCAUAAUuaUAg- -3'
miRNA:   3'- -UACCUUUacCAAGGGUAUUAcgAUau -5'
31464 5' -45.2 NC_006649.1 + 31381 0.67 0.962885
Target:  5'- uAUGGAAuuaGUUCCCAUAAUGacaUAg- -3'
miRNA:   3'- -UACCUUuacCAAGGGUAUUACg--AUau -5'
31464 5' -45.2 NC_006649.1 + 8894 0.68 0.924831
Target:  5'- uAUGGGuuUGGUUCuCCAUAGcgagGUUGUGu -3'
miRNA:   3'- -UACCUuuACCAAG-GGUAUUa---CGAUAU- -5'
31464 5' -45.2 NC_006649.1 + 5442 0.68 0.924831
Target:  5'- uAUGGGAAccaUUCCCAUAAUGgUAUAg -3'
miRNA:   3'- -UACCUUUaccAAGGGUAUUACgAUAU- -5'
31464 5' -45.2 NC_006649.1 + 31698 0.68 0.924831
Target:  5'- uAUGGAAAcuGUUCCCAUAAUuuUAUGg -3'
miRNA:   3'- -UACCUUUacCAAGGGUAUUAcgAUAU- -5'
31464 5' -45.2 NC_006649.1 + 31312 0.69 0.886795
Target:  5'- uAUGGAAAccaUUCCCAUAAUGgUAUAg -3'
miRNA:   3'- -UACCUUUaccAAGGGUAUUACgAUAU- -5'
31464 5' -45.2 NC_006649.1 + 31518 0.78 0.422616
Target:  5'- uAUGGGAAUGGUUCCCAUAAa------ -3'
miRNA:   3'- -UACCUUUACCAAGGGUAUUacgauau -5'
31464 5' -45.2 NC_006649.1 + 5534 0.8 0.340949
Target:  5'- -aGG-AAUGGUUCCCAUAAUGCc--- -3'
miRNA:   3'- uaCCuUUACCAAGGGUAUUACGauau -5'
31464 5' -45.2 NC_006649.1 + 5485 0.9 0.08194
Target:  5'- uAUGGGAAUGGUaCCUAUAAUGCUAUAg -3'
miRNA:   3'- -UACCUUUACCAaGGGUAUUACGAUAU- -5'
31464 5' -45.2 NC_006649.1 + 31263 0.98 0.022827
Target:  5'- uAUGGGAAUGGUUUCCAUAAUGCUAUAg -3'
miRNA:   3'- -UACCUUUACCAAGGGUAUUACGAUAU- -5'
31464 5' -45.2 NC_006649.1 + 31401 1.05 0.008468
Target:  5'- uAUGGGAAUGGUUCCCAUAAUGCUAUAa -3'
miRNA:   3'- -UACCUUUACCAAGGGUAUUACGAUAU- -5'
31464 5' -45.2 NC_006649.1 + 5393 1.05 0.008468
Target:  5'- uAUGGGAAUGGUUCCCAUAAUGCUAUAg -3'
miRNA:   3'- -UACCUUUACCAAGGGUAUUACGAUAU- -5'
31464 5' -45.2 NC_006649.1 + 31355 1.06 0.007133
Target:  5'- uAUGGAAAUGGUUCCCAUAAUGCUAUAg -3'
miRNA:   3'- -UACCUUUACCAAGGGUAUUACGAUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.