miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31465 3' -39 NC_006649.1 + 31484 0.66 0.999999
Target:  5'- uCCUAUAauagUAUAGGAAUGa-UUCUu -3'
miRNA:   3'- -GGAUAUgauaAUAUCCUUACcaAAGG- -5'
31465 3' -39 NC_006649.1 + 31576 0.67 0.999998
Target:  5'- uCCUAUACaAUUAUAGGAGauUGaaa-CCa -3'
miRNA:   3'- -GGAUAUGaUAAUAUCCUU--ACcaaaGG- -5'
31465 3' -39 NC_006649.1 + 5453 0.67 0.999991
Target:  5'- uCCUAUAgcAUUAUGGGAaccauucccauaAUGGUauaggaauagUUCCc -3'
miRNA:   3'- -GGAUAUgaUAAUAUCCU------------UACCA----------AAGG- -5'
31465 3' -39 NC_006649.1 + 5428 0.68 0.999986
Target:  5'- uCCUAUACUAUUAUAGaaacua-UUCCu -3'
miRNA:   3'- -GGAUAUGAUAAUAUCcuuaccaAAGG- -5'
31465 3' -39 NC_006649.1 + 31298 0.68 0.999986
Target:  5'- uCCUAUACUAUUAUAGaaacua-UUCCu -3'
miRNA:   3'- -GGAUAUGAUAAUAUCcuuaccaAAGG- -5'
31465 3' -39 NC_006649.1 + 31625 0.68 0.999972
Target:  5'- gCCUGggaACUGUucccauaaaauUAUGGGAAcaGUUUCCa -3'
miRNA:   3'- -GGAUa--UGAUA-----------AUAUCCUUacCAAAGG- -5'
31465 3' -39 NC_006649.1 + 31415 0.69 0.999921
Target:  5'- uCCUAUAgcAUUAUGGGAAccaUUUCCa -3'
miRNA:   3'- -GGAUAUgaUAAUAUCCUUaccAAAGG- -5'
31465 3' -39 NC_006649.1 + 5474 0.72 0.997551
Target:  5'- uCCcAUAaUAUUAUGGGAAUGGUa-CCu -3'
miRNA:   3'- -GGaUAUgAUAAUAUCCUUACCAaaGG- -5'
31465 3' -39 NC_006649.1 + 5568 0.73 0.996332
Target:  5'- uCCUAUAaUAUUAUAGGAAUaa-UUCCu -3'
miRNA:   3'- -GGAUAUgAUAAUAUCCUUAccaAAGG- -5'
31465 3' -39 NC_006649.1 + 31390 0.93 0.310793
Target:  5'- uCCUAUAaUAUUAUGGGAAUGGUUcCCa -3'
miRNA:   3'- -GGAUAUgAUAAUAUCCUUACCAAaGG- -5'
31465 3' -39 NC_006649.1 + 5520 0.94 0.284904
Target:  5'- uCCUAUAaUAUUAUAGGAAUGGUUcCCa -3'
miRNA:   3'- -GGAUAUgAUAAUAUCCUUACCAAaGG- -5'
31465 3' -39 NC_006649.1 + 5382 0.97 0.198225
Target:  5'- uCCUAUACcAUUAUGGGAAUGGUUcCCa -3'
miRNA:   3'- -GGAUAUGaUAAUAUCCUUACCAAaGG- -5'
31465 3' -39 NC_006649.1 + 31252 1.08 0.046707
Target:  5'- uCCUAUACcAUUAUGGGAAUGGUUUCCa -3'
miRNA:   3'- -GGAUAUGaUAAUAUCCUUACCAAAGG- -5'
31465 3' -39 NC_006649.1 + 31529 1.08 0.045147
Target:  5'- uCCUAUACUAUUAUGGGAAUGGUUcCCa -3'
miRNA:   3'- -GGAUAUGAUAAUAUCCUUACCAAaGG- -5'
31465 3' -39 NC_006649.1 + 31436 1.2 0.008971
Target:  5'- uCCUAUACUAUUAUAGGAAUGGUUUCCa -3'
miRNA:   3'- -GGAUAUGAUAAUAUCCUUACCAAAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.