miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31466 3' -41.9 NC_006649.1 + 5570 0.68 0.995023
Target:  5'- aUUCCUAUAAUaUUAUaGGAAUAaUUCCu -3'
miRNA:   3'- -AAGGGUAUUA-AAUAcCCUUAUcAAGG- -5'
31466 3' -41.9 NC_006649.1 + 8881 0.68 0.995023
Target:  5'- -aCCCuucagauUUUAUGGGuuUGGUUCUc -3'
miRNA:   3'- aaGGGuauu---AAAUACCCuuAUCAAGG- -5'
31466 3' -41.9 NC_006649.1 + 16626 0.72 0.957212
Target:  5'- aUgCCAUAAUcUGUGGGggUGGgcagaaagCCu -3'
miRNA:   3'- aAgGGUAUUAaAUACCCuuAUCaa------GG- -5'
31466 3' -41.9 NC_006649.1 + 31457 0.73 0.935632
Target:  5'- gUUUCCAUAAUUUAUGGGAAc------ -3'
miRNA:   3'- -AAGGGUAUUAAAUACCCUUaucaagg -5'
31466 3' -41.9 NC_006649.1 + 31440 0.74 0.90816
Target:  5'- aUUCCCAUAAUaUUAUaGGAAUAaUUCCu -3'
miRNA:   3'- -AAGGGUAUUA-AAUAcCCUUAUcAAGG- -5'
31466 3' -41.9 NC_006649.1 + 31371 0.77 0.781494
Target:  5'- gUUCCCAUAAUgacAUaGGAAUAGUUUCu -3'
miRNA:   3'- -AAGGGUAUUAaa-UAcCCUUAUCAAGG- -5'
31466 3' -41.9 NC_006649.1 + 31599 0.78 0.733896
Target:  5'- uUUCCUAgaa-UUAUGGGAAcAGUUCCu -3'
miRNA:   3'- -AAGGGUauuaAAUACCCUUaUCAAGG- -5'
31466 3' -41.9 NC_006649.1 + 31343 0.78 0.696693
Target:  5'- aUUCCAUAAUaUUAUGGaAAUGGUUCCc -3'
miRNA:   3'- aAGGGUAUUA-AAUACCcUUAUCAAGG- -5'
31466 3' -41.9 NC_006649.1 + 31636 0.81 0.582327
Target:  5'- gUUCCCAUAAaaUUAUGGGAAcAGUuUCCa -3'
miRNA:   3'- -AAGGGUAUUa-AAUACCCUUaUCA-AGG- -5'
31466 3' -41.9 NC_006649.1 + 5518 0.81 0.569706
Target:  5'- aUUCCUAUAAUaUUAUaGGAAUGGUUCCc -3'
miRNA:   3'- -AAGGGUAUUA-AAUAcCCUUAUCAAGG- -5'
31466 3' -41.9 NC_006649.1 + 31250 0.83 0.449034
Target:  5'- aUUCCUAUAccaUUAUGGGAAUGGUuUCCa -3'
miRNA:   3'- -AAGGGUAUua-AAUACCCUUAUCA-AGG- -5'
31466 3' -41.9 NC_006649.1 + 31479 0.86 0.334341
Target:  5'- aUUCCCAUAAUagUAUaGGAAUAGUUCCc -3'
miRNA:   3'- -AAGGGUAUUAa-AUAcCCUUAUCAAGG- -5'
31466 3' -41.9 NC_006649.1 + 5432 0.87 0.281435
Target:  5'- aUUCCCAUAAUggUAUaGGAAUAGUUCCc -3'
miRNA:   3'- -AAGGGUAUUAa-AUAcCCUUAUCAAGG- -5'
31466 3' -41.9 NC_006649.1 + 31302 0.87 0.281435
Target:  5'- aUUCCCAUAAUggUAUaGGAAUAGUUCCc -3'
miRNA:   3'- -AAGGGUAUUAa-AUAcCCUUAUCAAGG- -5'
31466 3' -41.9 NC_006649.1 + 31642 0.87 0.281435
Target:  5'- aUUCCCAUAAaUUAUGGGAAcuGUUCCc -3'
miRNA:   3'- -AAGGGUAUUaAAUACCCUUauCAAGG- -5'
31466 3' -41.9 NC_006649.1 + 31531 0.9 0.195839
Target:  5'- aUUCCUAUAcuaUUAUGGGAAUGGUUCCc -3'
miRNA:   3'- -AAGGGUAUua-AAUACCCUUAUCAAGG- -5'
31466 3' -41.9 NC_006649.1 + 5380 0.9 0.195839
Target:  5'- aUUCCUAUAccaUUAUGGGAAUGGUUCCc -3'
miRNA:   3'- -AAGGGUAUua-AAUACCCUUAUCAAGG- -5'
31466 3' -41.9 NC_006649.1 + 5473 0.92 0.152219
Target:  5'- aUCCCAUAAUaUUAUGGGAAUGGUaCCu -3'
miRNA:   3'- aAGGGUAUUA-AAUACCCUUAUCAaGG- -5'
31466 3' -41.9 NC_006649.1 + 31688 0.93 0.142782
Target:  5'- gUUCCCAUAAuUUUAUGGGAAcAGUUCCc -3'
miRNA:   3'- -AAGGGUAUU-AAAUACCCUUaUCAAGG- -5'
31466 3' -41.9 NC_006649.1 + 5615 0.93 0.138267
Target:  5'- aUUCCCAUAAuUUUAUGGGAAcAGUUCCc -3'
miRNA:   3'- -AAGGGUAUU-AAAUACCCUUaUCAAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.