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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31487 | 5' | -54.5 | NC_006654.1 | + | 6760 | 0.78 | 0.034183 |
Target: 5'- cUCCAGCUUGGUCCAAgUCUcGAACUc- -3' miRNA: 3'- -AGGUCGGACCGGGUUgAGA-CUUGAaa -5' |
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31487 | 5' | -54.5 | NC_006654.1 | + | 6694 | 1.06 | 0.000194 |
Target: 5'- cUCCAGCCUGGCCCAACUCUGAACUUUa -3' miRNA: 3'- -AGGUCGGACCGGGUUGAGACUUGAAA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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