miRNA: 3'- caGUCUAAaGUUcGGGGUCCUaGACc -5'
miRNA: 3'- -CAGUCUAAAGUuCGGGGUCCUaGACC- -5'
miRNA: 3'- cAGUCUAAAGUUCGGGGUCCUaGACC- -5'
miRNA: 3'- -CAGUCUAAAGUUCGGGGUCCUaGACC- -5'
miRNA: 3'- -CAGUCUAAAGUUCGGGGUCCUAGACC- -5'
Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 31490 | 5' | -50.8 | NC_006655.1 | + | 13255 | 0.68 | 0.452006 |
|
Target: 5'- -cCAGAUUcCAGaCCCCAGGAaCUGa -3' miRNA: 3'- caGUCUAAaGUUcGGGGUCCUaGACc -5' |
|||||||
| 31490 | 5' | -50.8 | NC_006655.1 | + | 12825 | 0.95 | 0.006012 |
|
Target: 5'- gGUCAGAUUUCAuGCCCCAGGAaCUGGa -3' miRNA: 3'- -CAGUCUAAAGUuCGGGGUCCUaGACC- -5' |
|||||||
| 31490 | 5' | -50.8 | NC_006655.1 | + | 12925 | 0.99 | 0.002657 |
|
Target: 5'- cUCAGAUUUCAAGCCCCAGGAaCUGGa -3' miRNA: 3'- cAGUCUAAAGUUCGGGGUCCUaGACC- -5' |
|||||||
| 31490 | 5' | -50.8 | NC_006655.1 | + | 12858 | 1.02 | 0.001541 |
|
Target: 5'- gGUCAGAUUUCAAGCCCCAGGAaCUGGa -3' miRNA: 3'- -CAGUCUAAAGUUCGGGGUCCUaGACC- -5' |
|||||||
| 31490 | 5' | -50.8 | NC_006655.1 | + | 13088 | 1.12 | 0.000321 |
|
Target: 5'- gGUCAGAUUUCAAGCCCCAGGAUCUGGa -3' miRNA: 3'- -CAGUCUAAAGUUCGGGGUCCUAGACC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home