Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31495 | 5' | -50 | NC_006657.1 | + | 10622 | 0.69 | 0.490568 |
Target: 5'- -gAUCUGACcAGAUCUGGUCAa---- -3' miRNA: 3'- gaUAGACUGcUCUAGACCGGUcuaua -5' |
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31495 | 5' | -50 | NC_006657.1 | + | 10907 | 0.69 | 0.47897 |
Target: 5'- -gAUCUGGCcAGAUCuguuuauauaUGGCCAGAUc- -3' miRNA: 3'- gaUAGACUGcUCUAG----------ACCGGUCUAua -5' |
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31495 | 5' | -50 | NC_006657.1 | + | 10597 | 0.69 | 0.47897 |
Target: 5'- -gAUCUGGCcAGAUCuguuuauauaUGGCCAGAUc- -3' miRNA: 3'- gaUAGACUGcUCUAG----------ACCGGUCUAua -5' |
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31495 | 5' | -50 | NC_006657.1 | + | 10635 | 0.72 | 0.351971 |
Target: 5'- aUAUCUGGCcAGAUCUcGUCAGAUAg -3' miRNA: 3'- gAUAGACUGcUCUAGAcCGGUCUAUa -5' |
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31495 | 5' | -50 | NC_006657.1 | + | 10545 | 0.73 | 0.306567 |
Target: 5'- -gAUCUGGCcauauauaaacAGAUCUGGCCAGAUc- -3' miRNA: 3'- gaUAGACUGc----------UCUAGACCGGUCUAua -5' |
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31495 | 5' | -50 | NC_006657.1 | + | 10958 | 0.73 | 0.306567 |
Target: 5'- -gAUCUGGCcauauauaaacAGAUCUGGCCAGAUc- -3' miRNA: 3'- gaUAGACUGc----------UCUAGACCGGUCUAua -5' |
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31495 | 5' | -50 | NC_006657.1 | + | 10664 | 0.74 | 0.265784 |
Target: 5'- -aAUUUGACcAGAUCUGGUCAGAUc- -3' miRNA: 3'- gaUAGACUGcUCUAGACCGGUCUAua -5' |
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31495 | 5' | -50 | NC_006657.1 | + | 10590 | 1.07 | 0.001141 |
Target: 5'- uCUAUCUGACGAGAUCUGGCCAGAUAUa -3' miRNA: 3'- -GAUAGACUGCUCUAGACCGGUCUAUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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