Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31512 | 5' | -45.8 | NC_006660.1 | + | 10570 | 0.87 | 0.078655 |
Target: 5'- aCAGAUCUGGCCAGAUCUGc------- -3' miRNA: 3'- -GUCUAGACCGGUCUAGACaaauauau -5' |
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31512 | 5' | -45.8 | NC_006660.1 | + | 10594 | 0.68 | 0.80419 |
Target: 5'- gCAGAUCUaGCCAGAUCU-UUUAa--- -3' miRNA: 3'- -GUCUAGAcCGGUCUAGAcAAAUauau -5' |
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31512 | 5' | -45.8 | NC_006660.1 | + | 10608 | 1.08 | 0.002891 |
Target: 5'- gCAGAUCUGGCCAGAUCUGUUUAUAUAu -3' miRNA: 3'- -GUCUAGACCGGUCUAGACAAAUAUAU- -5' |
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31512 | 5' | -45.8 | NC_006660.1 | + | 10631 | 0.78 | 0.276125 |
Target: 5'- aAGAUCUGGCUAGAUCUGc------- -3' miRNA: 3'- gUCUAGACCGGUCUAGACaaauauau -5' |
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31512 | 5' | -45.8 | NC_006660.1 | + | 10632 | 0.7 | 0.732934 |
Target: 5'- gAGAUCUGGCCAGAUa---------- -3' miRNA: 3'- gUCUAGACCGGUCUAgacaaauauau -5' |
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31512 | 5' | -45.8 | NC_006660.1 | + | 10651 | 0.73 | 0.553673 |
Target: 5'- uCAGAUCUGaCCAGAUCUGg------- -3' miRNA: 3'- -GUCUAGACcGGUCUAGACaaauauau -5' |
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31512 | 5' | -45.8 | NC_006660.1 | + | 10665 | 0.67 | 0.884761 |
Target: 5'- ---nUCUGGCCAGAUCUcGUcagAUAc- -3' miRNA: 3'- gucuAGACCGGUCUAGA-CAaa-UAUau -5' |
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31512 | 5' | -45.8 | NC_006660.1 | + | 10689 | 0.89 | 0.054109 |
Target: 5'- cCAGAUCUGGUCAGAUCUGaUUAUAUc -3' miRNA: 3'- -GUCUAGACCGGUCUAGACaAAUAUAu -5' |
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31512 | 5' | -45.8 | NC_006660.1 | + | 10929 | 1.08 | 0.002891 |
Target: 5'- gCAGAUCUGGCCAGAUCUGUUUAUAUAu -3' miRNA: 3'- -GUCUAGACCGGUCUAGACAAAUAUAU- -5' |
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31512 | 5' | -45.8 | NC_006660.1 | + | 10967 | 0.87 | 0.078655 |
Target: 5'- aCAGAUCUGGCCAGAUCUGc------- -3' miRNA: 3'- -GUCUAGACCGGUCUAGACaaauauau -5' |
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31512 | 5' | -45.8 | NC_006660.1 | + | 11632 | 0.69 | 0.757443 |
Target: 5'- ---nUCUGGUCAGAUCUaUUUAUAUc -3' miRNA: 3'- gucuAGACCGGUCUAGAcAAAUAUAu -5' |
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31512 | 5' | -45.8 | NC_006660.1 | + | 11666 | 0.76 | 0.368346 |
Target: 5'- cCAGAuacaauuauaUCUGGUCAGAUCUGaUUAUAUc -3' miRNA: 3'- -GUCU----------AGACCGGUCUAGACaAAUAUAu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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