Results 1 - 10 of 10 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 31518 | 3' | -37.8 | NC_006661.1 | + | 4127 | 0.68 | 0.996364 |
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Target: 5'- ------cAUUAucCUGUgGCUGCAACAu -3' miRNA: 3'- cuuuuuuUAAUu-GACAaCGACGUUGU- -5' |
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| 31518 | 3' | -37.8 | NC_006661.1 | + | 4195 | 0.69 | 0.993217 |
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Target: 5'- ---cAGGAUUuuuucCUGUcGCUGCAACAa -3' miRNA: 3'- cuuuUUUUAAuu---GACAaCGACGUUGU- -5' |
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| 31518 | 3' | -37.8 | NC_006661.1 | + | 4194 | 0.71 | 0.973973 |
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Target: 5'- ---cAGGAUUuucCUGUaGCUGCAACAu -3' miRNA: 3'- cuuuUUUUAAuu-GACAaCGACGUUGU- -5' |
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| 31518 | 3' | -37.8 | NC_006661.1 | + | 4090 | 0.77 | 0.772451 |
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Target: 5'- -----------cCUGUUGCUGCAACAu -3' miRNA: 3'- cuuuuuuuaauuGACAACGACGUUGU- -5' |
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| 31518 | 3' | -37.8 | NC_006661.1 | + | 4114 | 0.77 | 0.772451 |
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Target: 5'- -----------cCUGUUGCUGCAACAu -3' miRNA: 3'- cuuuuuuuaauuGACAACGACGUUGU- -5' |
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| 31518 | 3' | -37.8 | NC_006661.1 | + | 4264 | 0.78 | 0.717887 |
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Target: 5'- -cAGGAcuUUAucCUGUUGCUGCAACAu -3' miRNA: 3'- cuUUUUuuAAUu-GACAACGACGUUGU- -5' |
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| 31518 | 3' | -37.8 | NC_006661.1 | + | 5198 | 0.81 | 0.560459 |
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Target: 5'- ---cAGGAUUuucuuCUGUUGCUGCAACAu -3' miRNA: 3'- cuuuUUUUAAuu---GACAACGACGUUGU- -5' |
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| 31518 | 3' | -37.8 | NC_006661.1 | + | 5201 | 0.83 | 0.464565 |
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Target: 5'- -cAAAGGAUUAcuACUGUUGUUGCGACu -3' miRNA: 3'- cuUUUUUUAAU--UGACAACGACGUUGu -5' |
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| 31518 | 3' | -37.8 | NC_006661.1 | + | 4027 | 1.02 | 0.033714 |
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Target: 5'- gGAAAAAAAUaAACUGUUGCUGCAACAg -3' miRNA: 3'- -CUUUUUUUAaUUGACAACGACGUUGU- -5' |
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| 31518 | 3' | -37.8 | NC_006661.1 | + | 5271 | 1.12 | 0.007402 |
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Target: 5'- gGAAAAAAAUUAACUGUUGCUGCAACAg -3' miRNA: 3'- -CUUUUUUUAAUUGACAACGACGUUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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