Results 1 - 13 of 13 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31518 | 5' | -43.1 | NC_006661.1 | + | 4226 | 0.99 | 0.012472 |
Target: 5'- cCAUGUUGCAGCAACAGGAuAAAGUCCu -3' miRNA: 3'- -GUACAACGUCGUUGUCUUcUUUUAGG- -5' |
|||||||
31518 | 5' | -43.1 | NC_006661.1 | + | 5186 | 0.67 | 0.907089 |
Target: 5'- -cUGUUGCuGCAACAGGAuuuucuUCUg -3' miRNA: 3'- guACAACGuCGUUGUCUUcuuuu-AGG- -5' |
|||||||
31518 | 5' | -43.1 | NC_006661.1 | + | 4252 | 0.69 | 0.805668 |
Target: 5'- -cUGUUGUAGCAACAGGAu------- -3' miRNA: 3'- guACAACGUCGUUGUCUUcuuuuagg -5' |
|||||||
31518 | 5' | -43.1 | NC_006661.1 | + | 4040 | 0.73 | 0.581291 |
Target: 5'- -cUGUUGCuGCAACAGGAGGc----- -3' miRNA: 3'- guACAACGuCGUUGUCUUCUuuuagg -5' |
|||||||
31518 | 5' | -43.1 | NC_006661.1 | + | 5234 | 0.75 | 0.459922 |
Target: 5'- -cUGUUGCAGCAACAGuuaauuuuuuUCCg -3' miRNA: 3'- guACAACGUCGUUGUCuucuuuu---AGG- -5' |
|||||||
31518 | 5' | -43.1 | NC_006661.1 | + | 4086 | 0.82 | 0.184659 |
Target: 5'- nCAUGUUGCAGCAACAGGAaAAAAc-- -3' miRNA: 3'- -GUACAACGUCGUUGUCUUcUUUUagg -5' |
|||||||
31518 | 5' | -43.1 | NC_006661.1 | + | 4158 | 0.92 | 0.037574 |
Target: 5'- -uUGUUGCAGCGACAGGAaAAAAUCCu -3' miRNA: 3'- guACAACGUCGUUGUCUUcUUUUAGG- -5' |
|||||||
31518 | 5' | -43.1 | NC_006661.1 | + | 4062 | 0.97 | 0.018717 |
Target: 5'- uCAUGUUGCAGCAACAGGAGgcAGUCa -3' miRNA: 3'- -GUACAACGUCGUUGUCUUCuuUUAGg -5' |
|||||||
31518 | 5' | -43.1 | NC_006661.1 | + | 4161 | 0.72 | 0.64953 |
Target: 5'- cCAUGUUGCAGCcACAGGAu--AAUgCu -3' miRNA: 3'- -GUACAACGUCGuUGUCUUcuuUUAgG- -5' |
|||||||
31518 | 5' | -43.1 | NC_006661.1 | + | 5258 | 0.73 | 0.581291 |
Target: 5'- -cUGUUGCuGCAACAGGAGGc----- -3' miRNA: 3'- guACAACGuCGUUGUCUUCUuuuagg -5' |
|||||||
31518 | 5' | -43.1 | NC_006661.1 | + | 4065 | 0.75 | 0.459922 |
Target: 5'- -cUGUUGCAGCAACAGuuuauuuuuuUCCg -3' miRNA: 3'- guACAACGUCGUUGUCuucuuuu---AGG- -5' |
|||||||
31518 | 5' | -43.1 | NC_006661.1 | + | 4230 | 0.86 | 0.102812 |
Target: 5'- uCAUGUUGCAGCuACA--GGAAAAUCCu -3' miRNA: 3'- -GUACAACGUCGuUGUcuUCUUUUAGG- -5' |
|||||||
31518 | 5' | -43.1 | NC_006661.1 | + | 5236 | 1.14 | 0.001119 |
Target: 5'- uCAUGUUGCAGCAACAGAAGAAAAUCCu -3' miRNA: 3'- -GUACAACGUCGUUGUCUUCUUUUAGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home