Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31525 | 3' | -44.3 | NC_006662.1 | + | 10494 | 0.82 | 0.212408 |
Target: 5'- ----cAGAUCUGGCCAGAUCUg---- -3' miRNA: 3'- ccuaaUCUAGACCGGUCUAGAaauuu -5' |
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31525 | 3' | -44.3 | NC_006662.1 | + | 10201 | 0.68 | 0.888948 |
Target: 5'- -aAUUAcAUCUGGUCAGAUCUa---- -3' miRNA: 3'- ccUAAUcUAGACCGGUCUAGAaauuu -5' |
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31525 | 3' | -44.3 | NC_006662.1 | + | 10181 | 0.68 | 0.888948 |
Target: 5'- -aAUUAuAUCUGGUCAGAUCUa---- -3' miRNA: 3'- ccUAAUcUAGACCGGUCUAGAaauuu -5' |
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31525 | 3' | -44.3 | NC_006662.1 | + | 10766 | 0.69 | 0.830164 |
Target: 5'- ----cAGAUCUGGUCAGAUCn----- -3' miRNA: 3'- ccuaaUCUAGACCGGUCUAGaaauuu -5' |
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31525 | 3' | -44.3 | NC_006662.1 | + | 10470 | 0.71 | 0.723229 |
Target: 5'- aGAUUAGAUCUGGCCAu--------- -3' miRNA: 3'- cCUAAUCUAGACCGGUcuagaaauuu -5' |
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31525 | 3' | -44.3 | NC_006662.1 | + | 10782 | 0.79 | 0.316338 |
Target: 5'- uGAUUAuAUCUGGCCAGAUCUc---- -3' miRNA: 3'- cCUAAUcUAGACCGGUCUAGAaauuu -5' |
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31525 | 3' | -44.3 | NC_006662.1 | + | 10823 | 0.82 | 0.212408 |
Target: 5'- ----aAGAUCUGGCCAGAUCUa---- -3' miRNA: 3'- ccuaaUCUAGACCGGUCUAGAaauuu -5' |
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31525 | 3' | -44.3 | NC_006662.1 | + | 10861 | 1.11 | 0.002439 |
Target: 5'- cGGAUUAGAUCUGGCCAGAUCUUUAAAu -3' miRNA: 3'- -CCUAAUCUAGACCGGUCUAGAAAUUU- -5' |
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31525 | 3' | -44.3 | NC_006662.1 | + | 10527 | 0.82 | 0.212408 |
Target: 5'- ----cAGAUCUGGCCAGAUCUg---- -3' miRNA: 3'- ccuaaUCUAGACCGGUCUAGAaauuu -5' |
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31525 | 3' | -44.3 | NC_006662.1 | + | 10823 | 0.74 | 0.566535 |
Target: 5'- uGAcgAGAUCUGGCCAGAUa------ -3' miRNA: 3'- cCUaaUCUAGACCGGUCUAgaaauuu -5' |
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31525 | 3' | -44.3 | NC_006662.1 | + | 10201 | 0.68 | 0.888948 |
Target: 5'- -aAUUAuAUCUGGUCAGAUCUa---- -3' miRNA: 3'- ccUAAUcUAGACCGGUCUAGAaauuu -5' |
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31525 | 3' | -44.3 | NC_006662.1 | + | 960 | 0.66 | 0.940614 |
Target: 5'- aGGAUaauagUGGAUUUGGCCAacAUCUUg--- -3' miRNA: 3'- -CCUA-----AUCUAGACCGGUc-UAGAAauuu -5' |
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31525 | 3' | -44.3 | NC_006662.1 | + | 10799 | 0.66 | 0.946422 |
Target: 5'- ----cAGAUCUGaCCAGAUCUg---- -3' miRNA: 3'- ccuaaUCUAGACcGGUCUAGAaauuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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