Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31530 | 5' | -43.3 | NC_006662.1 | + | 10186 | 0.75 | 0.536448 |
Target: 5'- -------uAUCUGGUCAGAUCUAAUUa -3' miRNA: 3'- uaaauuucUAGACCGGUCUAGAUUAG- -5' |
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31530 | 5' | -43.3 | NC_006662.1 | + | 10200 | 0.71 | 0.796332 |
Target: 5'- -aUUAu--AUCUGGUCAGAUCUAAa- -3' miRNA: 3'- uaAAUuucUAGACCGGUCUAGAUUag -5' |
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31530 | 5' | -43.3 | NC_006662.1 | + | 10206 | 0.68 | 0.906898 |
Target: 5'- -------cAUCUGGUCAGAUCUAu-- -3' miRNA: 3'- uaaauuucUAGACCGGUCUAGAUuag -5' |
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31530 | 5' | -43.3 | NC_006662.1 | + | 10243 | 0.67 | 0.947818 |
Target: 5'- --aUAAauAGAUCUGaCCAGAUgUAAUUa -3' miRNA: 3'- uaaAUU--UCUAGACcGGUCUAgAUUAG- -5' |
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31530 | 5' | -43.3 | NC_006662.1 | + | 10489 | 0.84 | 0.175537 |
Target: 5'- --aUAAacAGAUCUGGCCAGAUCUGc-- -3' miRNA: 3'- uaaAUU--UCUAGACCGGUCUAGAUuag -5' |
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31530 | 5' | -43.3 | NC_006662.1 | + | 10532 | 0.86 | 0.134366 |
Target: 5'- -cUUAGcAGAUCUGGCCAGAUCUGu-- -3' miRNA: 3'- uaAAUU-UCUAGACCGGUCUAGAUuag -5' |
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31530 | 5' | -43.3 | NC_006662.1 | + | 10758 | 0.91 | 0.058497 |
Target: 5'- aAUUUGAccAGAUCUGGUCAGAUCUGAUUa -3' miRNA: 3'- -UAAAUU--UCUAGACCGGUCUAGAUUAG- -5' |
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31530 | 5' | -43.3 | NC_006662.1 | + | 10788 | 0.78 | 0.3916 |
Target: 5'- -------uAUCUGGCCAGAUCUcGUCa -3' miRNA: 3'- uaaauuucUAGACCGGUCUAGAuUAG- -5' |
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31530 | 5' | -43.3 | NC_006662.1 | + | 10799 | 0.8 | 0.310281 |
Target: 5'- -----cAGAUCUGaCCAGAUCUGGUCa -3' miRNA: 3'- uaaauuUCUAGACcGGUCUAGAUUAG- -5' |
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31530 | 5' | -43.3 | NC_006662.1 | + | 10817 | 1.09 | 0.004078 |
Target: 5'- aAUUUAAAGAUCUGGCCAGAUCUAAUCc -3' miRNA: 3'- -UAAAUUUCUAGACCGGUCUAGAUUAG- -5' |
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31530 | 5' | -43.3 | NC_006662.1 | + | 10820 | 0.86 | 0.13898 |
Target: 5'- ----cGAGAUCUGGCCAGAUaUAAUCa -3' miRNA: 3'- uaaauUUCUAGACCGGUCUAgAUUAG- -5' |
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31530 | 5' | -43.3 | NC_006662.1 | + | 10856 | 0.82 | 0.242469 |
Target: 5'- -----uAGAUCUGGCCAGAUCUuuaaauuGUCu -3' miRNA: 3'- uaaauuUCUAGACCGGUCUAGAu------UAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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