Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31532 | 5' | -41.3 | NC_006820.1 | + | 94215 | 0.7 | 1 |
Target: 5'- uUGGAGAGAGauuCAagAUAACGGACAa- -3' miRNA: 3'- uAUCUCUCUU---GUaaUAUUGCUUGUgg -5' |
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31532 | 5' | -41.3 | NC_006820.1 | + | 98885 | 0.69 | 1 |
Target: 5'- cUGGAucGAGAAUAagAUGaACGAAUACCu -3' miRNA: 3'- uAUCU--CUCUUGUaaUAU-UGCUUGUGG- -5' |
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31532 | 5' | -41.3 | NC_006820.1 | + | 89008 | 0.68 | 1 |
Target: 5'- cUGGuGGAGAGCGUgAUGAUGAAUcuuCCa -3' miRNA: 3'- uAUC-UCUCUUGUAaUAUUGCUUGu--GG- -5' |
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31532 | 5' | -41.3 | NC_006820.1 | + | 109678 | 0.66 | 1 |
Target: 5'- --cGAGAGAGCAUUuguuuc-GCACCu -3' miRNA: 3'- uauCUCUCUUGUAAuauugcuUGUGG- -5' |
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31532 | 5' | -41.3 | NC_006820.1 | + | 28225 | 0.68 | 1 |
Target: 5'- -aGGAcaccauuGAACGUgaaugAACGAGCACCa -3' miRNA: 3'- uaUCUcu-----CUUGUAaua--UUGCUUGUGG- -5' |
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31532 | 5' | -41.3 | NC_006820.1 | + | 138322 | 0.68 | 1 |
Target: 5'- -cAGAGAaugcGAuuGCGUUGUaggGACGGAUGCCu -3' miRNA: 3'- uaUCUCU----CU--UGUAAUA---UUGCUUGUGG- -5' |
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31532 | 5' | -41.3 | NC_006820.1 | + | 16787 | 0.69 | 1 |
Target: 5'- uUAGA-AGGGCAUUGUAG-GAGCACa -3' miRNA: 3'- uAUCUcUCUUGUAAUAUUgCUUGUGg -5' |
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31532 | 5' | -41.3 | NC_006820.1 | + | 114299 | 0.73 | 0.999975 |
Target: 5'- cUGGuAGAGAGCAgUAUGGCauGAAUGCCa -3' miRNA: 3'- uAUC-UCUCUUGUaAUAUUG--CUUGUGG- -5' |
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31532 | 5' | -41.3 | NC_006820.1 | + | 5420 | 0.73 | 0.999966 |
Target: 5'- aGUAGAacugGAGAGCGU---AGCGAGCACg -3' miRNA: 3'- -UAUCU----CUCUUGUAauaUUGCUUGUGg -5' |
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31532 | 5' | -41.3 | NC_006820.1 | + | 17580 | 1.13 | 0.066274 |
Target: 5'- aAUAGAGAGAACAUUAUAACGAACACCu -3' miRNA: 3'- -UAUCUCUCUUGUAAUAUUGCUUGUGG- -5' |
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31532 | 5' | -41.3 | NC_006820.1 | + | 112259 | 0.66 | 1 |
Target: 5'- --uGAGAuuGCAUUGUAguaucuACGAACAUa -3' miRNA: 3'- uauCUCUcuUGUAAUAU------UGCUUGUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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