Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31532 | 5' | -41.3 | NC_006820.1 | + | 801 | 0.71 | 0.999999 |
Target: 5'- -gGGAGAGAcccGCAUUG--GCGAGaACCg -3' miRNA: 3'- uaUCUCUCU---UGUAAUauUGCUUgUGG- -5' |
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31532 | 5' | -41.3 | NC_006820.1 | + | 5420 | 0.73 | 0.999966 |
Target: 5'- aGUAGAacugGAGAGCGU---AGCGAGCACg -3' miRNA: 3'- -UAUCU----CUCUUGUAauaUUGCUUGUGg -5' |
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31532 | 5' | -41.3 | NC_006820.1 | + | 15654 | 0.67 | 1 |
Target: 5'- -aAGGGAG-ACAUgugugGAUGGGCAUCu -3' miRNA: 3'- uaUCUCUCuUGUAaua--UUGCUUGUGG- -5' |
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31532 | 5' | -41.3 | NC_006820.1 | + | 16787 | 0.69 | 1 |
Target: 5'- uUAGA-AGGGCAUUGUAG-GAGCACa -3' miRNA: 3'- uAUCUcUCUUGUAAUAUUgCUUGUGg -5' |
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31532 | 5' | -41.3 | NC_006820.1 | + | 17395 | 0.68 | 1 |
Target: 5'- -aAGAGAuguuuGAGCGUUGUGACuGGGCAg- -3' miRNA: 3'- uaUCUCU-----CUUGUAAUAUUG-CUUGUgg -5' |
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31532 | 5' | -41.3 | NC_006820.1 | + | 17580 | 1.13 | 0.066274 |
Target: 5'- aAUAGAGAGAACAUUAUAACGAACACCu -3' miRNA: 3'- -UAUCUCUCUUGUAAUAUUGCUUGUGG- -5' |
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31532 | 5' | -41.3 | NC_006820.1 | + | 18489 | 0.67 | 1 |
Target: 5'- -aAGGGAGGACAUUAUGcuuGGCAUUg -3' miRNA: 3'- uaUCUCUCUUGUAAUAUugcUUGUGG- -5' |
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31532 | 5' | -41.3 | NC_006820.1 | + | 18937 | 0.71 | 0.999999 |
Target: 5'- -aAGAGAGGAUGaagAUGA-GAACACCu -3' miRNA: 3'- uaUCUCUCUUGUaa-UAUUgCUUGUGG- -5' |
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31532 | 5' | -41.3 | NC_006820.1 | + | 21744 | 0.66 | 1 |
Target: 5'- cUAGGGGGG-------GGCGGGCACCg -3' miRNA: 3'- uAUCUCUCUuguaauaUUGCUUGUGG- -5' |
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31532 | 5' | -41.3 | NC_006820.1 | + | 23930 | 0.67 | 1 |
Target: 5'- ----cGAGGGCAUgau--CGGGCGCCa -3' miRNA: 3'- uaucuCUCUUGUAauauuGCUUGUGG- -5' |
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31532 | 5' | -41.3 | NC_006820.1 | + | 24417 | 0.67 | 1 |
Target: 5'- -cAGAGGcAGCAgugcuacGCGAGCGCCu -3' miRNA: 3'- uaUCUCUcUUGUaauau--UGCUUGUGG- -5' |
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31532 | 5' | -41.3 | NC_006820.1 | + | 24697 | 0.67 | 1 |
Target: 5'- cGUAGAGGcAGCGUgguUGGCaGGCGCCu -3' miRNA: 3'- -UAUCUCUcUUGUAau-AUUGcUUGUGG- -5' |
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31532 | 5' | -41.3 | NC_006820.1 | + | 28225 | 0.68 | 1 |
Target: 5'- -aGGAcaccauuGAACGUgaaugAACGAGCACCa -3' miRNA: 3'- uaUCUcu-----CUUGUAaua--UUGCUUGUGG- -5' |
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31532 | 5' | -41.3 | NC_006820.1 | + | 79103 | 0.73 | 0.999982 |
Target: 5'- gAUGGAG-GAGCGUcuUAACGAACAg- -3' miRNA: 3'- -UAUCUCuCUUGUAauAUUGCUUGUgg -5' |
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31532 | 5' | -41.3 | NC_006820.1 | + | 81664 | 0.76 | 0.999199 |
Target: 5'- cUGGAGGGggUGUUAccuACGAugACCu -3' miRNA: 3'- uAUCUCUCuuGUAAUau-UGCUugUGG- -5' |
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31532 | 5' | -41.3 | NC_006820.1 | + | 85141 | 0.71 | 0.999999 |
Target: 5'- -gGGAGGGAAac-UAUGACGAuuGCCc -3' miRNA: 3'- uaUCUCUCUUguaAUAUUGCUugUGG- -5' |
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31532 | 5' | -41.3 | NC_006820.1 | + | 88970 | 0.74 | 0.999954 |
Target: 5'- -aGGAGGugguGAGCAUUcUGACGAACAgCa -3' miRNA: 3'- uaUCUCU----CUUGUAAuAUUGCUUGUgG- -5' |
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31532 | 5' | -41.3 | NC_006820.1 | + | 89008 | 0.68 | 1 |
Target: 5'- cUGGuGGAGAGCGUgAUGAUGAAUcuuCCa -3' miRNA: 3'- uAUC-UCUCUUGUAaUAUUGCUUGu--GG- -5' |
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31532 | 5' | -41.3 | NC_006820.1 | + | 89828 | 0.66 | 1 |
Target: 5'- aAUGaAGGGAuCAUUAUGAUGAauuACAUCa -3' miRNA: 3'- -UAUcUCUCUuGUAAUAUUGCU---UGUGG- -5' |
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31532 | 5' | -41.3 | NC_006820.1 | + | 94215 | 0.7 | 1 |
Target: 5'- uUGGAGAGAGauuCAagAUAACGGACAa- -3' miRNA: 3'- uAUCUCUCUU---GUaaUAUUGCUUGUgg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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