miRNA: 3'- uacGGGAGCCaG-UACGUCGCCUGcuu -5'
miRNA: 3'- uaCGGGAgCCa-GUa--CGUCGCCugCUU- -5'
miRNA: 3'- -UACGGGaGCCaGUa--CGUCGCCugCUU- -5'
miRNA: 3'- -UACGGGAGCCAGUACGUCGCCUGCUU- -5'
Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 31535 | 3' | -58.8 | NC_006820.1 | + | 23580 | 0.67 | 0.767773 |
|
Target: 5'- --cCCCUUGGcCgAUGCAGCGGGCu-- -3' miRNA: 3'- uacGGGAGCCaG-UACGUCGCCUGcuu -5' |
|||||||
| 31535 | 3' | -58.8 | NC_006820.1 | + | 183265 | 0.68 | 0.690377 |
|
Target: 5'- -gGUCCUgGGggCGgcgGCGGCGGugGAGg -3' miRNA: 3'- uaCGGGAgCCa-GUa--CGUCGCCugCUU- -5' |
|||||||
| 31535 | 3' | -58.8 | NC_006820.1 | + | 183292 | 0.68 | 0.690377 |
|
Target: 5'- gGUGCCCcUGG-CGgcgGCGGUGGugGAGu -3' miRNA: 3'- -UACGGGaGCCaGUa--CGUCGCCugCUU- -5' |
|||||||
| 31535 | 3' | -58.8 | NC_006820.1 | + | 24134 | 1.03 | 0.003897 |
|
Target: 5'- cAUGCCCUCGGUCAUGCAGCGGACGAAc -3' miRNA: 3'- -UACGGGAGCCAGUACGUCGCCUGCUU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home