miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31536 3' -47.1 NC_006820.1 + 22991 0.66 0.999971
Target:  5'- uGCAGaAUGaaUAGAAAAGGgGgGAGGGUu -3'
miRNA:   3'- gUGUC-UAC--GUCUUUUUCgCaUUCCCG- -5'
31536 3' -47.1 NC_006820.1 + 26206 0.66 0.999971
Target:  5'- --uGGAUuaAGAAuauuucaacAAAGCGUGAGGaGCu -3'
miRNA:   3'- gugUCUAcgUCUU---------UUUCGCAUUCC-CG- -5'
31536 3' -47.1 NC_006820.1 + 161338 0.66 0.999961
Target:  5'- -cUAGAUaGUAauGAGcuuGAGCGUAAGGGUu -3'
miRNA:   3'- guGUCUA-CGU--CUUu--UUCGCAUUCCCG- -5'
31536 3' -47.1 NC_006820.1 + 80206 0.66 0.999941
Target:  5'- uCAUAGGUGcCAGGAGcAGCGUcguuaagaagagcAGGGUu -3'
miRNA:   3'- -GUGUCUAC-GUCUUUuUCGCAu------------UCCCG- -5'
31536 3' -47.1 NC_006820.1 + 152197 0.66 0.99993
Target:  5'- gCACAGAgaaaAGAAAAGGCG-AAGGa- -3'
miRNA:   3'- -GUGUCUacg-UCUUUUUCGCaUUCCcg -5'
31536 3' -47.1 NC_006820.1 + 135838 0.67 0.999798
Target:  5'- aACAGggGCuGAGuAAGCGacacaaauccAAGGGCg -3'
miRNA:   3'- gUGUCuaCGuCUUuUUCGCa---------UUCCCG- -5'
31536 3' -47.1 NC_006820.1 + 145710 0.67 0.999671
Target:  5'- gGCAGAcagcUGaGGAAGAGGCacaGGGGGCu -3'
miRNA:   3'- gUGUCU----ACgUCUUUUUCGca-UUCCCG- -5'
31536 3' -47.1 NC_006820.1 + 5378 0.68 0.999585
Target:  5'- -uCAGGaucUGCuGGAGAcgGGCGUucauGGGGCg -3'
miRNA:   3'- guGUCU---ACGuCUUUU--UCGCAu---UCCCG- -5'
31536 3' -47.1 NC_006820.1 + 37129 0.68 0.99948
Target:  5'- gGCGGugcuaggGCAGAAAucuuAGCGguugcuGGGCa -3'
miRNA:   3'- gUGUCua-----CGUCUUUu---UCGCauu---CCCG- -5'
31536 3' -47.1 NC_006820.1 + 108961 0.68 0.99948
Target:  5'- gGCAGAUGCAGuAAucGUG-AAGGuaGCa -3'
miRNA:   3'- gUGUCUACGUCuUUuuCGCaUUCC--CG- -5'
31536 3' -47.1 NC_006820.1 + 120052 0.68 0.9992
Target:  5'- cCACGGAUGCucguAAGGUu--GGGGCa -3'
miRNA:   3'- -GUGUCUACGucuuUUUCGcauUCCCG- -5'
31536 3' -47.1 NC_006820.1 + 111512 0.68 0.999183
Target:  5'- aCACaAGAUGguuGAAGAGGCGUGugaggaccuugcaGGGGUc -3'
miRNA:   3'- -GUG-UCUACgu-CUUUUUCGCAU-------------UCCCG- -5'
31536 3' -47.1 NC_006820.1 + 123703 0.69 0.998236
Target:  5'- aGCAGGagUGCcGAcAAAGUugacGUAGGGGCg -3'
miRNA:   3'- gUGUCU--ACGuCUuUUUCG----CAUUCCCG- -5'
31536 3' -47.1 NC_006820.1 + 80021 0.69 0.99788
Target:  5'- --aAGAUGCcucguGAAGaucuuGAGCGUAuGGGCg -3'
miRNA:   3'- gugUCUACGu----CUUU-----UUCGCAUuCCCG- -5'
31536 3' -47.1 NC_006820.1 + 183121 0.7 0.996436
Target:  5'- gGCGGcgGUGGAGGAGGUG-GAGGaGCu -3'
miRNA:   3'- gUGUCuaCGUCUUUUUCGCaUUCC-CG- -5'
31536 3' -47.1 NC_006820.1 + 85589 0.72 0.986789
Target:  5'- gUACAGAUGCcGAAAucGUcauGGGGCa -3'
miRNA:   3'- -GUGUCUACGuCUUUuuCGcauUCCCG- -5'
31536 3' -47.1 NC_006820.1 + 74841 0.73 0.976137
Target:  5'- -uCGaAUGCAGAAGGAGCaGcAAGGGCa -3'
miRNA:   3'- guGUcUACGUCUUUUUCG-CaUUCCCG- -5'
31536 3' -47.1 NC_006820.1 + 154583 0.73 0.976137
Target:  5'- cUACAGAcgcUGCuGGAGGGGCagcgAGGGGCg -3'
miRNA:   3'- -GUGUCU---ACGuCUUUUUCGca--UUCCCG- -5'
31536 3' -47.1 NC_006820.1 + 26480 1.14 0.012401
Target:  5'- gCACAGAUGCAGAAAAAGCGUAAGGGCa -3'
miRNA:   3'- -GUGUCUACGUCUUUUUCGCAUUCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.