miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3154 3' -53.7 NC_001499.1 + 3827 0.69 0.091892
Target:  5'- aGCAGGAGAcccauccacagGCAG-UGAGgAGAGguGGCu -3'
miRNA:   3'- aCGUCCUCU-----------CGUCgACUCgUCUU--UCG- -5'
3154 3' -53.7 NC_001499.1 + 3775 0.71 0.066945
Target:  5'- gGCAGGAaAGguGCaGGGCAGcuGGUg -3'
miRNA:   3'- aCGUCCUcUCguCGaCUCGUCuuUCG- -5'
3154 3' -53.7 NC_001499.1 + 2891 0.82 0.007369
Target:  5'- gGCAGGAGgaGGCGGCgGGGCAGGcuuGAGCu -3'
miRNA:   3'- aCGUCCUC--UCGUCGaCUCGUCU---UUCG- -5'
3154 3' -53.7 NC_001499.1 + 2583 1.11 0.000024
Target:  5'- cUGCAGGAGAGCAGCUGAGCAGAAAGCc -3'
miRNA:   3'- -ACGUCCUCUCGUCGACUCGUCUUUCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.