miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31540 3' -45.8 NC_006820.1 + 145979 0.66 0.999993
Target:  5'- -----cCUGCUCCCgaaGGAGAGUcucUCCc -3'
miRNA:   3'- uuuuuaGAUGGGGGag-UUUCUCA---AGG- -5'
31540 3' -45.8 NC_006820.1 + 79114 0.67 0.999981
Target:  5'- ---cAUUgACCUCCUCAGcaAGUUCCu -3'
miRNA:   3'- uuuuUAGaUGGGGGAGUUucUCAAGG- -5'
31540 3' -45.8 NC_006820.1 + 23918 0.67 0.999981
Target:  5'- gGGGGAUCUcgguCCCCCUUguGGcAGUUCa -3'
miRNA:   3'- -UUUUUAGAu---GGGGGAGuuUC-UCAAGg -5'
31540 3' -45.8 NC_006820.1 + 24611 0.67 0.999974
Target:  5'- ----cUCUGCCUUCUCAGcggcggcguAGAG-UCCg -3'
miRNA:   3'- uuuuuAGAUGGGGGAGUU---------UCUCaAGG- -5'
31540 3' -45.8 NC_006820.1 + 5253 0.67 0.999964
Target:  5'- gAAGGcgCUcaACCgCUUCcAAGAGUUCCu -3'
miRNA:   3'- -UUUUuaGA--UGGgGGAGuUUCUCAAGG- -5'
31540 3' -45.8 NC_006820.1 + 11561 0.67 0.999964
Target:  5'- gAGGAGUgUGCCagUUCAAGGAGUgUCCu -3'
miRNA:   3'- -UUUUUAgAUGGggGAGUUUCUCA-AGG- -5'
31540 3' -45.8 NC_006820.1 + 5637 0.67 0.999952
Target:  5'- gGAAuAUCUGCUCCCUgguauuggUGAAGAGUaucauuaucucuUCCg -3'
miRNA:   3'- -UUUuUAGAUGGGGGA--------GUUUCUCA------------AGG- -5'
31540 3' -45.8 NC_006820.1 + 112873 0.68 0.999942
Target:  5'- ----cUCUGCUCUCUCuuucagaagauccaaAAAGAGUUCUu -3'
miRNA:   3'- uuuuuAGAUGGGGGAG---------------UUUCUCAAGG- -5'
31540 3' -45.8 NC_006820.1 + 130871 0.68 0.999935
Target:  5'- -----cUUACCCCaaCcAGGAGUUCCa -3'
miRNA:   3'- uuuuuaGAUGGGGgaGuUUCUCAAGG- -5'
31540 3' -45.8 NC_006820.1 + 16723 0.68 0.999935
Target:  5'- ---uAUCUACCCCCgaugaccaguUUGAAGAGUgUCa -3'
miRNA:   3'- uuuuUAGAUGGGGG----------AGUUUCUCAaGG- -5'
31540 3' -45.8 NC_006820.1 + 90035 0.68 0.999887
Target:  5'- -------gAUCCCUUCAuugagGGGAGUUCCa -3'
miRNA:   3'- uuuuuagaUGGGGGAGU-----UUCUCAAGG- -5'
31540 3' -45.8 NC_006820.1 + 135666 0.69 0.999755
Target:  5'- --uGGUCUACCCCUUUGGAcaaGGUUCUu -3'
miRNA:   3'- uuuUUAGAUGGGGGAGUUUc--UCAAGG- -5'
31540 3' -45.8 NC_006820.1 + 7644 0.77 0.94252
Target:  5'- ---uGUCUGCCUCCUCAcAGGAuUUCCa -3'
miRNA:   3'- uuuuUAGAUGGGGGAGU-UUCUcAAGG- -5'
31540 3' -45.8 NC_006820.1 + 81778 1.12 0.02172
Target:  5'- aAAAAAUCUACCCCCUCAAAGAGUUCCa -3'
miRNA:   3'- -UUUUUAGAUGGGGGAGUUUCUCAAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.