miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31545 3' -55.9 NC_006820.1 + 175772 0.66 0.942034
Target:  5'- uGCC-CCACCAcCACCAACUgaACUAu -3'
miRNA:   3'- gUGGcGGUGGUcGUGGUUGAacUGGU- -5'
31545 3' -55.9 NC_006820.1 + 156868 0.66 0.9273
Target:  5'- uCACCaucaaCACCAGCACCuaguGCUccGCCAa -3'
miRNA:   3'- -GUGGcg---GUGGUCGUGGu---UGAacUGGU- -5'
31545 3' -55.9 NC_006820.1 + 177129 0.67 0.904364
Target:  5'- aGCUGCCAUCGGCAC-AAUUauGCCAu -3'
miRNA:   3'- gUGGCGGUGGUCGUGgUUGAacUGGU- -5'
31545 3' -55.9 NC_006820.1 + 156483 0.67 0.891505
Target:  5'- cCACCGaaagauCCACCcuucaucguggcAGCACUAGCagGACCAc -3'
miRNA:   3'- -GUGGC------GGUGG------------UCGUGGUUGaaCUGGU- -5'
31545 3' -55.9 NC_006820.1 + 23600 0.68 0.86313
Target:  5'- aGgCGUCACgAGCACCuguccccCUUGGCCGa -3'
miRNA:   3'- gUgGCGGUGgUCGUGGuu-----GAACUGGU- -5'
31545 3' -55.9 NC_006820.1 + 132704 0.68 0.839677
Target:  5'- uGCU-CCACCAGCACCAACagGuaauaACCAa -3'
miRNA:   3'- gUGGcGGUGGUCGUGGUUGaaC-----UGGU- -5'
31545 3' -55.9 NC_006820.1 + 21686 0.69 0.831479
Target:  5'- cUugUGCCACUGGC-CCGACc-GACCAc -3'
miRNA:   3'- -GugGCGGUGGUCGuGGUUGaaCUGGU- -5'
31545 3' -55.9 NC_006820.1 + 63215 0.7 0.778809
Target:  5'- aUACCGauguuCCAaUACCAACUUGACCAu -3'
miRNA:   3'- -GUGGCggu--GGUcGUGGUUGAACUGGU- -5'
31545 3' -55.9 NC_006820.1 + 80727 0.7 0.769528
Target:  5'- uCACCGauggaaggaCCACCAGCGCCGuUUaGACCu -3'
miRNA:   3'- -GUGGC---------GGUGGUCGUGGUuGAaCUGGu -5'
31545 3' -55.9 NC_006820.1 + 183323 0.71 0.728355
Target:  5'- cCGCCGCCGCCAGCaacauuacaucggaACCAGCaaGAg-- -3'
miRNA:   3'- -GUGGCGGUGGUCG--------------UGGUUGaaCUggu -5'
31545 3' -55.9 NC_006820.1 + 143833 0.71 0.681645
Target:  5'- uCGCCGacuucuccgacuCCACCAaCACCAGCUUG-CCAa -3'
miRNA:   3'- -GUGGC------------GGUGGUcGUGGUUGAACuGGU- -5'
31545 3' -55.9 NC_006820.1 + 183485 0.73 0.610681
Target:  5'- cCACCGCCGCCGcCGCCcccagGACCAu -3'
miRNA:   3'- -GUGGCGGUGGUcGUGGuugaaCUGGU- -5'
31545 3' -55.9 NC_006820.1 + 183554 0.78 0.322779
Target:  5'- cCACCGCCuccuCCAGCGCCGccagagcaguCUUGACCu -3'
miRNA:   3'- -GUGGCGGu---GGUCGUGGUu---------GAACUGGu -5'
31545 3' -55.9 NC_006820.1 + 183270 0.79 0.308443
Target:  5'- gCACCuCCACCAGCACCAcaACcaGACCAu -3'
miRNA:   3'- -GUGGcGGUGGUCGUGGU--UGaaCUGGU- -5'
31545 3' -55.9 NC_006820.1 + 123729 1.08 0.003755
Target:  5'- cCACCGCCACCAGCACCAACUUGACCAg -3'
miRNA:   3'- -GUGGCGGUGGUCGUGGUUGAACUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.