miRNA: 3'- cUGCUGG--------AUGCGAA-----AUGU--UUUCGCAA- -5'
miRNA: 3'- cugCUGGAUGCG-AAAUGUUUuCGcaa -5'
miRNA: 3'- cUGCUGGAUGCGAA------AUGUUUUCg---CAA- -5'
miRNA: 3'- -CUGCUGGAUGCGAAAUGUUUUCGCAA- -5'
Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 31547 | 5' | -46.9 | NC_006820.1 | + | 103675 | 0.66 | 0.999969 |
|
Target: 5'- aGCGACUaagcaguuUACGCUUgguuaUACGauGAAGCGUUu -3' miRNA: 3'- cUGCUGG--------AUGCGAA-----AUGU--UUUCGCAA- -5' |
|||||||
| 31547 | 5' | -46.9 | NC_006820.1 | + | 47258 | 0.66 | 0.999926 |
|
Target: 5'- --aGACCUAUGCgUUUGCAAAuGCa-- -3' miRNA: 3'- cugCUGGAUGCG-AAAUGUUUuCGcaa -5' |
|||||||
| 31547 | 5' | -46.9 | NC_006820.1 | + | 146050 | 0.7 | 0.996824 |
|
Target: 5'- uGCGACUUGCGCUUaagaucUGCAAAAGacauGUUg -3' miRNA: 3'- cUGCUGGAUGCGAA------AUGUUUUCg---CAA- -5' |
|||||||
| 31547 | 5' | -46.9 | NC_006820.1 | + | 164557 | 1.07 | 0.031895 |
|
Target: 5'- cGACGACCUACGCUUUACAAAAGCGUUg -3' miRNA: 3'- -CUGCUGGAUGCGAAAUGUUUUCGCAA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home