Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
31549 | 3' | -59.2 | NC_006820.1 | + | 80730 | 0.66 | 0.835688 |
Target: 5'- aCUUCACCgauggaaGGACCACCa---GCGCCGu -3' miRNA: 3'- -GAAGUGG-------UCUGGUGGcuccCGCGGCu -5' |
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31549 | 3' | -59.2 | NC_006820.1 | + | 112379 | 0.66 | 0.819518 |
Target: 5'- -aUCGCUAGuaaagauACUAUCGAGGGUGUCa- -3' miRNA: 3'- gaAGUGGUC-------UGGUGGCUCCCGCGGcu -5' |
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31549 | 3' | -59.2 | NC_006820.1 | + | 177028 | 0.69 | 0.673755 |
Target: 5'- --aCACCAGAUggauUGCCaGGGGCGCCa- -3' miRNA: 3'- gaaGUGGUCUG----GUGGcUCCCGCGGcu -5' |
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31549 | 3' | -59.2 | NC_006820.1 | + | 72552 | 0.7 | 0.642429 |
Target: 5'- uCUUCuccuuCCAGACCcguuguauaaauCCGaAGGGCGCCa- -3' miRNA: 3'- -GAAGu----GGUCUGGu-----------GGC-UCCCGCGGcu -5' |
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31549 | 3' | -59.2 | NC_006820.1 | + | 63809 | 0.7 | 0.605149 |
Target: 5'- --gCACCAGA-CGCCGAaGGUGCUGAu -3' miRNA: 3'- gaaGUGGUCUgGUGGCUcCCGCGGCU- -5' |
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31549 | 3' | -59.2 | NC_006820.1 | + | 24188 | 0.71 | 0.566197 |
Target: 5'- --cCGCCAGGCauuCGCCGAGGGuCGCuCGu -3' miRNA: 3'- gaaGUGGUCUG---GUGGCUCCC-GCG-GCu -5' |
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31549 | 3' | -59.2 | NC_006820.1 | + | 21902 | 0.76 | 0.299212 |
Target: 5'- gUUCACCGcACC-CCaGAGGGCGCUGAg -3' miRNA: 3'- gAAGUGGUcUGGuGG-CUCCCGCGGCU- -5' |
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31549 | 3' | -59.2 | NC_006820.1 | + | 21632 | 1.09 | 0.002172 |
Target: 5'- cCUUCACCAGACCACCGAGGGCGCCGAg -3' miRNA: 3'- -GAAGUGGUCUGGUGGCUCCCGCGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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