miRNA display CGI

Results 1 - 10 of 10 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
31554	3'	-57.7	NC_006820.1	+	21687	0.66	0.853816
	Target:  5'- cUGGCaggGGCAGGCAacaUCGUgGCAgaugccCUGAUg -3' miRNA:   3'- uACCG---UCGUCCGU---AGCGgUGU------GACUG- -5'
31554	3'	-57.7	NC_006820.1	+	193130	0.67	0.812443
	Target:  5'- gAUGGUAGgAGGCAggaugcUGCCGCuCUGGa -3' miRNA:   3'- -UACCGUCgUCCGUa-----GCGGUGuGACUg -5'
31554	3'	-57.7	NC_006820.1	+	16437	0.67	0.785604
	Target:  5'- -aGGC-GCAGGUAgacacuUCGCC-CACUGGu -3' miRNA:   3'- uaCCGuCGUCCGU------AGCGGuGUGACUg -5'
31554	3'	-57.7	NC_006820.1	+	24420	0.67	0.767009
	Target:  5'- -aGGCAGCAGuGCuacgcgagCGCCugGaaGACg -3' miRNA:   3'- uaCCGUCGUC-CGua------GCGGugUgaCUG- -5'
31554	3'	-57.7	NC_006820.1	+	23775	0.68	0.746973
	Target:  5'- uUGGCAaucgcGUAGGCGUgguucauguucucUGCC-CACUGGCa -3' miRNA:   3'- uACCGU-----CGUCCGUA-------------GCGGuGUGACUG- -5'
31554	3'	-57.7	NC_006820.1	+	125993	0.68	0.704658
	Target:  5'- aAUGGCAGCuggaucuucuagcGGCGUCuCCACACUcGAa -3' miRNA:   3'- -UACCGUCGu------------CCGUAGcGGUGUGA-CUg -5'
31554	3'	-57.7	NC_006820.1	+	22852	0.73	0.459938
	Target:  5'- uGUGGUuagguccuGCAGGCGUUGCCucuaucauuGCACUGAUc -3' miRNA:   3'- -UACCGu-------CGUCCGUAGCGG---------UGUGACUG- -5'
31554	3'	-57.7	NC_006820.1	+	24702	0.76	0.297835
	Target:  5'- -aGGCAGCGugguuGGCAggCGCCuACGCUGACc -3' miRNA:   3'- uaCCGUCGU-----CCGUa-GCGG-UGUGACUG- -5'
31554	3'	-57.7	NC_006820.1	+	23629	0.77	0.258689
	Target:  5'- aGUGGCAGCAGGCAgcgggacacuUCGCCAgGCgucACg -3' miRNA:   3'- -UACCGUCGUCCGU----------AGCGGUgUGac-UG- -5'
31554	3'	-57.7	NC_006820.1	+	23311	1.06	0.002819
	Target:  5'- gAUGGCAGCAGGCAUCGCCACACUGACc -3' miRNA:   3'- -UACCGUCGUCCGUAGCGGUGUGACUG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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