Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31558 | 5' | -57.5 | NC_006820.1 | + | 154573 | 0.66 | 0.881569 |
Target: 5'- uGCUGGaGGGGCAGcgagGGGCgcaggAGAGGgGGg -3' miRNA: 3'- gCGACUcUUCCGUC----UCCG-----UCUCCgUC- -5' |
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31558 | 5' | -57.5 | NC_006820.1 | + | 14544 | 0.66 | 0.859816 |
Target: 5'- -uUUGAaGAGGCAGAGcGUcguGAGGCAGc -3' miRNA: 3'- gcGACUcUUCCGUCUC-CGu--CUCCGUC- -5' |
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31558 | 5' | -57.5 | NC_006820.1 | + | 183114 | 0.67 | 0.81109 |
Target: 5'- uGCUGGcGgcGGCGGuGGaGGAGGUGGa -3' miRNA: 3'- gCGACU-CuuCCGUCuCCgUCUCCGUC- -5' |
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31558 | 5' | -57.5 | NC_006820.1 | + | 69422 | 0.68 | 0.793504 |
Target: 5'- uGCUGAGcaAGGGCcaGGAGGCgcuAGAcGGCGc -3' miRNA: 3'- gCGACUC--UUCCG--UCUCCG---UCU-CCGUc -5' |
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31558 | 5' | -57.5 | NC_006820.1 | + | 183341 | 0.69 | 0.708355 |
Target: 5'- gCGCUgGAGGAGGC---GGUGGAGGUGGa -3' miRNA: 3'- -GCGA-CUCUUCCGucuCCGUCUCCGUC- -5' |
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31558 | 5' | -57.5 | NC_006820.1 | + | 21673 | 0.71 | 0.618073 |
Target: 5'- uCGUUcGGGAugaucuGGCAGGGGCAGGcaacaucguGGCAGa -3' miRNA: 3'- -GCGA-CUCUu-----CCGUCUCCGUCU---------CCGUC- -5' |
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31558 | 5' | -57.5 | NC_006820.1 | + | 24399 | 1.08 | 0.002779 |
Target: 5'- cCGCUGAGAAGGCAGAGGCAGAGGCAGc -3' miRNA: 3'- -GCGACUCUUCCGUCUCCGUCUCCGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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