Results 1 - 6 of 6 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31559 | 5' | -50.4 | NC_006820.1 | + | 12086 | 0.66 | 0.998239 |
Target: 5'- -cUCUUuacUUCCCGACCcuucuGGGGUAAGa-- -3' miRNA: 3'- guAGAA---AGGGGUUGG-----UCCCAUUCagu -5' |
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31559 | 5' | -50.4 | NC_006820.1 | + | 131091 | 0.66 | 0.998239 |
Target: 5'- -uUCUggaacUCCUggUUGGGGUAAGUCAg -3' miRNA: 3'- guAGAaa---GGGGuuGGUCCCAUUCAGU- -5' |
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31559 | 5' | -50.4 | NC_006820.1 | + | 46996 | 0.67 | 0.992565 |
Target: 5'- -uUCUguguaUCCCCuuCCAGGGaGAGUa- -3' miRNA: 3'- guAGAa----AGGGGuuGGUCCCaUUCAgu -5' |
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31559 | 5' | -50.4 | NC_006820.1 | + | 143796 | 0.7 | 0.96284 |
Target: 5'- aAUCUUUaUCCCAAUCAGGGUuaucuuugcgccacuGGUCGu -3' miRNA: 3'- gUAGAAA-GGGGUUGGUCCCAu--------------UCAGU- -5' |
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31559 | 5' | -50.4 | NC_006820.1 | + | 143879 | 0.72 | 0.90894 |
Target: 5'- gAUCUcUCCCCAuCCuGGGUGAGa-- -3' miRNA: 3'- gUAGAaAGGGGUuGGuCCCAUUCagu -5' |
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31559 | 5' | -50.4 | NC_006820.1 | + | 58302 | 1.09 | 0.011603 |
Target: 5'- gCAUCUUUCCCCAACCAGGGUAAGUCAa -3' miRNA: 3'- -GUAGAAAGGGGUUGGUCCCAUUCAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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