miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3156 5' -54.7 NC_001499.1 + 2889 1.08 0.000031
Target:  5'- cACAGGAAAAGCAGGCAAGCCCGCACAg -3'
miRNA:   3'- -UGUCCUUUUCGUCCGUUCGGGCGUGU- -5'
3156 5' -54.7 NC_001499.1 + 2931 0.74 0.027412
Target:  5'- gGCcGGGGAGGCAGGgGGGCCCacaaagacaaaauGCACGa -3'
miRNA:   3'- -UGuCCUUUUCGUCCgUUCGGG-------------CGUGU- -5'
3156 5' -54.7 NC_001499.1 + 3775 0.74 0.031754
Target:  5'- gGCAGGAAAGGUgcaGGGC-AGCUggUGCACAa -3'
miRNA:   3'- -UGUCCUUUUCG---UCCGuUCGG--GCGUGU- -5'
3156 5' -54.7 NC_001499.1 + 2891 0.67 0.105314
Target:  5'- gGCAGGAgGAGGCggcgGGGCAGGCuuGaGCu -3'
miRNA:   3'- -UGUCCU-UUUCG----UCCGUUCGggCgUGu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.