miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31563 3' -43.2 NC_006820.1 + 103433 0.66 1
Target:  5'- aCUUCAAuuucuuggcgaggucAGGGAuCUCACCAugguUCUu -3'
miRNA:   3'- gGAAGUU---------------UUCCUuGAGUGGUuu--AGAu -5'
31563 3' -43.2 NC_006820.1 + 102338 0.66 1
Target:  5'- gUCUUCAAAA-GAAUcCGCUAGAUCUu -3'
miRNA:   3'- -GGAAGUUUUcCUUGaGUGGUUUAGAu -5'
31563 3' -43.2 NC_006820.1 + 78885 0.67 1
Target:  5'- aCUUCuaAGAAGGAACUUGCUgaggAGGUCa- -3'
miRNA:   3'- gGAAG--UUUUCCUUGAGUGG----UUUAGau -5'
31563 3' -43.2 NC_006820.1 + 99095 0.66 1
Target:  5'- uUCUUac-AAGGAGCUCGCCA--UUUAu -3'
miRNA:   3'- -GGAAguuUUCCUUGAGUGGUuuAGAU- -5'
31563 3' -43.2 NC_006820.1 + 104340 0.66 1
Target:  5'- cCCUcccCAGAAGGAGgaCGCCAAGacuUCUc -3'
miRNA:   3'- -GGAa--GUUUUCCUUgaGUGGUUU---AGAu -5'
31563 3' -43.2 NC_006820.1 + 172163 0.66 1
Target:  5'- aCUUCA--AGGAAUUCAUCAGuuuGUCc- -3'
miRNA:   3'- gGAAGUuuUCCUUGAGUGGUU---UAGau -5'
31563 3' -43.2 NC_006820.1 + 92703 0.68 0.999999
Target:  5'- gCCUUCGGAAGaaGAGCagaaaACUAGAUCUGg -3'
miRNA:   3'- -GGAAGUUUUC--CUUGag---UGGUUUAGAU- -5'
31563 3' -43.2 NC_006820.1 + 160250 0.69 0.999996
Target:  5'- aUCUUCAucAGGAAgaucuauuucUUCAuCCAAAUCUAa -3'
miRNA:   3'- -GGAAGUuuUCCUU----------GAGU-GGUUUAGAU- -5'
31563 3' -43.2 NC_006820.1 + 14340 0.76 0.994946
Target:  5'- aCUUCAAGAGaGAACUCucCCAuucuGUCUAu -3'
miRNA:   3'- gGAAGUUUUC-CUUGAGu-GGUu---UAGAU- -5'
31563 3' -43.2 NC_006820.1 + 24696 0.8 0.953605
Target:  5'- aCCUUCAccagagaguAGAGGGGCUCACCAGGa--- -3'
miRNA:   3'- -GGAAGU---------UUUCCUUGAGUGGUUUagau -5'
31563 3' -43.2 NC_006820.1 + 145869 1.11 0.050775
Target:  5'- uCCUUCAAAAGGAACUCACCAAAUCUAg -3'
miRNA:   3'- -GGAAGUUUUCCUUGAGUGGUUUAGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.