miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3157 3' -48.6 NC_001499.1 + 4832 1.12 0.000108
Target:  5'- gGAUAUCUGUGGUAAGCAGUUCCUGCCc -3'
miRNA:   3'- -CUAUAGACACCAUUCGUCAAGGACGG- -5'
3157 3' -48.6 NC_001499.1 + 5656 1.12 0.000108
Target:  5'- gGAUAUCUGUGGUAAGCAGUUCCUGCCc -3'
miRNA:   3'- -CUAUAGACACCAUUCGUCAAGGACGG- -5'
3157 3' -48.6 NC_001499.1 + 4756 1.04 0.000451
Target:  5'- gGAUAUgCUGUGGUAAGCAGUUCCUGCCc -3'
miRNA:   3'- -CUAUA-GACACCAUUCGUCAAGGACGG- -5'
3157 3' -48.6 NC_001499.1 + 5580 1.04 0.000451
Target:  5'- gGAUAUgCUGUGGUAAGCAGUUCCUGCCc -3'
miRNA:   3'- -CUAUA-GACACCAUUCGUCAAGGACGG- -5'
3157 3' -48.6 NC_001499.1 + 2027 0.71 0.183637
Target:  5'- --gAUCUGUGuGgccauguaGAGCAGUaccacggcgcucaccUCCUGCCg -3'
miRNA:   3'- cuaUAGACAC-Ca-------UUCGUCA---------------AGGACGG- -5'
3157 3' -48.6 NC_001499.1 + 2582 0.68 0.278144
Target:  5'- --gGUCU-UGGUGGGCAGcUCUgggGCCu -3'
miRNA:   3'- cuaUAGAcACCAUUCGUCaAGGa--CGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.