miRNA: 3'- -CGUUUGcGGGa--CUCGGAAguGGUAUA- -5'
miRNA: 3'- cguuUGCGGGACUCGga-AGUGGUAUA- -5'
miRNA: 3'- -CGUUUGc-GGGACUCGGAAGUgGUAUa -5'
miRNA: 3'- -CGUUUGCGGGACUCGGAAGUGGUAUA- -5'
Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 31572 | 5' | -51.9 | NC_006852.1 | + | 10570 | 0.67 | 0.653515 |
|
Target: 5'- gGCAGAC-CCCaggGAGCCUU--CCAUGUu -3' miRNA: 3'- -CGUUUGcGGGa--CUCGGAAguGGUAUA- -5' |
|||||||
| 31572 | 5' | -51.9 | NC_006852.1 | + | 16482 | 0.68 | 0.58211 |
|
Target: 5'- ---uAUGUCCUGAGUgugUCACCAUAUg -3' miRNA: 3'- cguuUGCGGGACUCGga-AGUGGUAUA- -5' |
|||||||
| 31572 | 5' | -51.9 | NC_006852.1 | + | 30437 | 0.75 | 0.237807 |
|
Target: 5'- uGCAGACcuUCCUGAGCCUUCAaCAUAa -3' miRNA: 3'- -CGUUUGc-GGGACUCGGAAGUgGUAUa -5' |
|||||||
| 31572 | 5' | -51.9 | NC_006852.1 | + | 4388 | 1.07 | 0.001132 |
|
Target: 5'- gGCAAACGCCCUGAGCCUUCACCAUAUc -3' miRNA: 3'- -CGUUUGCGGGACUCGGAAGUGGUAUA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home