miRNA display CGI


Results 1 - 7 of 7 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3160 3' -53 NC_001500.1 + 536 1.12 0.000048
Target:  5'- cCGGACGAGCCCCCAAAUGAAAGACCCc -3'
miRNA:   3'- -GCCUGCUCGGGGGUUUACUUUCUGGG- -5'
3160 3' -53 NC_001500.1 + 1299 0.69 0.141591
Target:  5'- aCGGAgGggguucauaggcaauAGCCuCCCAGGUGAcaauauauGGGACCUg -3'
miRNA:   3'- -GCCUgC---------------UCGG-GGGUUUACU--------UUCUGGG- -5'
3160 3' -53 NC_001500.1 + 792 0.67 0.192766
Target:  5'- gGGccacccaGCGGGCCCCCGAugccucUGAGAcGucuCCCa -3'
miRNA:   3'- gCC-------UGCUCGGGGGUUu-----ACUUU-Cu--GGG- -5'
3160 3' -53 NC_001500.1 + 2042 0.67 0.206079
Target:  5'- uGGugGGGCUucugCCCGcggucuGGAGACCCg -3'
miRNA:   3'- gCCugCUCGG----GGGUuuac--UUUCUGGG- -5'
3160 3' -53 NC_001500.1 + 842 0.66 0.248547
Target:  5'- aGGAgGGGCCCcaaauaguCCGAAUcGGucAGGACUCg -3'
miRNA:   3'- gCCUgCUCGGG--------GGUUUA-CU--UUCUGGG- -5'
3160 3' -53 NC_001500.1 + 5107 0.66 0.256291
Target:  5'- gGGauGCGGGgCCCUAuAUuGAGGACCUg -3'
miRNA:   3'- gCC--UGCUCgGGGGUuUAcUUUCUGGG- -5'
3160 3' -53 NC_001500.1 + 3997 0.66 0.256292
Target:  5'- cCGGAauacucCGGGCCCCCAu-----GGACUUa -3'
miRNA:   3'- -GCCU------GCUCGGGGGUuuacuuUCUGGG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.