miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31604 5' -55.2 NC_006875.1 + 6074 0.66 0.185489
Target:  5'- uGCGGCAGaACCuggccggcgaugACGGCGccGCCGUCc-- -3'
miRNA:   3'- -CGCCGUUgUGG------------UGCCGU--CGGUAGuug -5'
31604 5' -55.2 NC_006875.1 + 5096 0.66 0.179693
Target:  5'- cGCGuGCGauggacgcugGCGCCAcCGGCGccGCCG-CAGCu -3'
miRNA:   3'- -CGC-CGU----------UGUGGU-GCCGU--CGGUaGUUG- -5'
31604 5' -55.2 NC_006875.1 + 1238 0.66 0.174059
Target:  5'- cGCGGCgAGCGCCAagugcUGGCuAGCaugcUCAAUg -3'
miRNA:   3'- -CGCCG-UUGUGGU-----GCCG-UCGgu--AGUUG- -5'
31604 5' -55.2 NC_006875.1 + 1842 0.66 0.16326
Target:  5'- gGUGGUGGCACCccaGGguGCUggcgcaggaaGUCGGCa -3'
miRNA:   3'- -CGCCGUUGUGGug-CCguCGG----------UAGUUG- -5'
31604 5' -55.2 NC_006875.1 + 5140 0.68 0.125873
Target:  5'- uGCGGCGGCGCCggugGCGcCAGCgucCAUCGcACg -3'
miRNA:   3'- -CGCCGUUGUGG----UGCcGUCG---GUAGU-UG- -5'
31604 5' -55.2 NC_006875.1 + 1809 0.69 0.110303
Target:  5'- uGCGcCAGCAcCCugGGguGCCAccaccugCAACg -3'
miRNA:   3'- -CGCcGUUGU-GGugCCguCGGUa------GUUG- -5'
31604 5' -55.2 NC_006875.1 + 5525 0.7 0.084433
Target:  5'- aGCGG-GAUACCGCcGCGGgCAUCAAUa -3'
miRNA:   3'- -CGCCgUUGUGGUGcCGUCgGUAGUUG- -5'
31604 5' -55.2 NC_006875.1 + 1259 0.7 0.081363
Target:  5'- uUGGCGcuCGCCGCguguggagaccguGGCAGCCAUCGu- -3'
miRNA:   3'- cGCCGUu-GUGGUG-------------CCGUCGGUAGUug -5'
31604 5' -55.2 NC_006875.1 + 6111 1.13 0.000023
Target:  5'- cGCGGCAACACCACGGCAGCCAUCAACa -3'
miRNA:   3'- -CGCCGUUGUGGUGCCGUCGGUAGUUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.