miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31607 3' -44.1 NC_006879.1 + 7924 0.66 0.995236
Target:  5'- -aGAGCG-UGAGCCAGGugcACAugguACUUg -3'
miRNA:   3'- gaUUCGCaACUCGGUUU---UGUuu--UGGA- -5'
31607 3' -44.1 NC_006879.1 + 24662 0.66 0.992005
Target:  5'- -gGGGCGUcggGGGCCGGGGCuucGGCUg -3'
miRNA:   3'- gaUUCGCAa--CUCGGUUUUGuu-UUGGa -5'
31607 3' -44.1 NC_006879.1 + 11312 0.67 0.990457
Target:  5'- -cAGGUGUUGuuuuagaugcagcGGCCGgcGGACGGGGCCa -3'
miRNA:   3'- gaUUCGCAAC-------------UCGGU--UUUGUUUUGGa -5'
31607 3' -44.1 NC_006879.1 + 6982 0.67 0.98919
Target:  5'- -cGAGCGUUGuugaugacuugcgccGCCAGGACGAucucgucgaAGCCg -3'
miRNA:   3'- gaUUCGCAACu--------------CGGUUUUGUU---------UUGGa -5'
31607 3' -44.1 NC_006879.1 + 20633 0.68 0.977798
Target:  5'- -cGGGCGUggaGGCCAGAGCGcugcgcuugagGAGCCc -3'
miRNA:   3'- gaUUCGCAac-UCGGUUUUGU-----------UUUGGa -5'
31607 3' -44.1 NC_006879.1 + 9410 0.68 0.977798
Target:  5'- ---uGCGUcgcuGUCAGAGCGAGGCCUg -3'
miRNA:   3'- gauuCGCAacu-CGGUUUUGUUUUGGA- -5'
31607 3' -44.1 NC_006879.1 + 11808 0.69 0.963994
Target:  5'- -aAGGCGUUGAguGCCAccAgAGAGCCc -3'
miRNA:   3'- gaUUCGCAACU--CGGUuuUgUUUUGGa -5'
31607 3' -44.1 NC_006879.1 + 3875 0.7 0.950323
Target:  5'- -aAAGCgGUUGAGCUggGAgGGAugCa -3'
miRNA:   3'- gaUUCG-CAACUCGGuuUUgUUUugGa -5'
31607 3' -44.1 NC_006879.1 + 11108 0.72 0.882107
Target:  5'- gCUGAGCGacaggGAGCUGAuGCAcAGCCUg -3'
miRNA:   3'- -GAUUCGCaa---CUCGGUUuUGUuUUGGA- -5'
31607 3' -44.1 NC_006879.1 + 34405 0.73 0.845336
Target:  5'- aUGAGCGggGAGgagCGAGGCGGGGCCg -3'
miRNA:   3'- gAUUCGCaaCUCg--GUUUUGUUUUGGa -5'
31607 3' -44.1 NC_006879.1 + 46 0.73 0.845336
Target:  5'- aUGAGCGggGAGgagCGAGGCGGGGCCg -3'
miRNA:   3'- gAUUCGCaaCUCg--GUUUUGUUUUGGa -5'
31607 3' -44.1 NC_006879.1 + 16658 0.73 0.814698
Target:  5'- aUGAGCGgccgcGAGCCGugccGCGGAGCCa -3'
miRNA:   3'- gAUUCGCaa---CUCGGUuu--UGUUUUGGa -5'
31607 3' -44.1 NC_006879.1 + 10375 0.78 0.599475
Target:  5'- -cAGGCuuUUGuGCCGAAGCAGAACCUg -3'
miRNA:   3'- gaUUCGc-AACuCGGUUUUGUUUUGGA- -5'
31607 3' -44.1 NC_006879.1 + 1508 1.09 0.008133
Target:  5'- gCUAAGCGUUGAGCCAAAACAAAACCUc -3'
miRNA:   3'- -GAUUCGCAACUCGGUUUUGUUUUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.