miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31608 3' -54.5 NC_006879.1 + 7979 0.66 0.616786
Target:  5'- cGUCCAGGcgUAGaggagGCCGUGuCCGCGc -3'
miRNA:   3'- -CAGGUUUuaGUCgg---CGGUAC-GGCGCu -5'
31608 3' -54.5 NC_006879.1 + 8980 0.66 0.616786
Target:  5'- uUCCGAGGUCGcaguucgaagacGCCGCCGcGCagaGCGc -3'
miRNA:   3'- cAGGUUUUAGU------------CGGCGGUaCGg--CGCu -5'
31608 3' -54.5 NC_006879.1 + 12445 0.67 0.548078
Target:  5'- uUCCAucgcgCGGCCGCCAUGaaCGgGGa -3'
miRNA:   3'- cAGGUuuua-GUCGGCGGUACg-GCgCU- -5'
31608 3' -54.5 NC_006879.1 + 22876 0.67 0.525661
Target:  5'- uUCCu--AUCGGCCGCgGUGCgGUu- -3'
miRNA:   3'- cAGGuuuUAGUCGGCGgUACGgCGcu -5'
31608 3' -54.5 NC_006879.1 + 32076 0.67 0.519003
Target:  5'- cGUCCAaccuuacuuuaacauAAAUCAGgUGUC-UGCCGCGu -3'
miRNA:   3'- -CAGGU---------------UUUAGUCgGCGGuACGGCGCu -5'
31608 3' -54.5 NC_006879.1 + 14939 0.68 0.470236
Target:  5'- aUCgGAGacGUCGccccaccGCCGCCAUGCUGCa- -3'
miRNA:   3'- cAGgUUU--UAGU-------CGGCGGUACGGCGcu -5'
31608 3' -54.5 NC_006879.1 + 23776 0.69 0.410065
Target:  5'- cUCCGGGAUCuuGcCCGCCAUgaGCUGCGc -3'
miRNA:   3'- cAGGUUUUAGu-C-GGCGGUA--CGGCGCu -5'
31608 3' -54.5 NC_006879.1 + 843 0.7 0.354031
Target:  5'- uGUCCAGAacauccugGUCauGGCUGCCGUGCCuGUGc -3'
miRNA:   3'- -CAGGUUU--------UAG--UCGGCGGUACGG-CGCu -5'
31608 3' -54.5 NC_006879.1 + 16670 0.75 0.180535
Target:  5'- uUCCAGGugcccaugagCGGCCgcgaGCCGUGCCGCGGa -3'
miRNA:   3'- cAGGUUUua--------GUCGG----CGGUACGGCGCU- -5'
31608 3' -54.5 NC_006879.1 + 14978 0.78 0.113422
Target:  5'- cUCCGAug-CAGCCGCCucuUGCgGCGAg -3'
miRNA:   3'- cAGGUUuuaGUCGGCGGu--ACGgCGCU- -5'
31608 3' -54.5 NC_006879.1 + 3431 1.09 0.000539
Target:  5'- aGUCCAAAAUCAGCCGCCAUGCCGCGAg -3'
miRNA:   3'- -CAGGUUUUAGUCGGCGGUACGGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.