miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31608 5' -60.1 NC_006879.1 + 2707 0.69 0.221471
Target:  5'- aGCuGCgAGggGCacaGGCcGCUGCCGCa- -3'
miRNA:   3'- cCGuCG-UCuuCG---CCGuCGACGGCGcc -5'
31608 5' -60.1 NC_006879.1 + 3325 0.69 0.193742
Target:  5'- uGGaCA-CuGccGCGGCAGCUGCCGCu- -3'
miRNA:   3'- -CC-GUcGuCuuCGCCGUCGACGGCGcc -5'
31608 5' -60.1 NC_006879.1 + 3394 1.11 0.000112
Target:  5'- cGGCAGCAGAAGCGGCAGCUGCCGCGGc -3'
miRNA:   3'- -CCGUCGUCUUCGCCGUCGACGGCGCC- -5'
31608 5' -60.1 NC_006879.1 + 4460 0.69 0.221471
Target:  5'- uGGUAGUucagAGAGGaa-CAGCUGCCGuCGGg -3'
miRNA:   3'- -CCGUCG----UCUUCgccGUCGACGGC-GCC- -5'
31608 5' -60.1 NC_006879.1 + 7819 0.7 0.178602
Target:  5'- aGGCGuuGCAGGAGgGgacGCAGCUGcCCGCu- -3'
miRNA:   3'- -CCGU--CGUCUUCgC---CGUCGAC-GGCGcc -5'
31608 5' -60.1 NC_006879.1 + 8065 0.77 0.054022
Target:  5'- gGGgGGUAGAGGCGGCucuGC-GCCGgGGg -3'
miRNA:   3'- -CCgUCGUCUUCGCCGu--CGaCGGCgCC- -5'
31608 5' -60.1 NC_006879.1 + 8092 0.67 0.265894
Target:  5'- gGGCAGCGGAGGCaguGGCAcGUUuUCGUGa -3'
miRNA:   3'- -CCGUCGUCUUCG---CCGU-CGAcGGCGCc -5'
31608 5' -60.1 NC_006879.1 + 9756 0.68 0.259131
Target:  5'- gGGcCAGCcGAcuguGGCGGgGGC-GCCGgGGg -3'
miRNA:   3'- -CC-GUCGuCU----UCGCCgUCGaCGGCgCC- -5'
31608 5' -60.1 NC_006879.1 + 10123 0.67 0.301858
Target:  5'- cGCAuCGGGAGCGGCGGauccgGCCGgucucgaacCGGg -3'
miRNA:   3'- cCGUcGUCUUCGCCGUCga---CGGC---------GCC- -5'
31608 5' -60.1 NC_006879.1 + 11080 0.69 0.20445
Target:  5'- aGGCGGU--GAGCGcCAGCcGCCgGCGGg -3'
miRNA:   3'- -CCGUCGucUUCGCcGUCGaCGG-CGCC- -5'
31608 5' -60.1 NC_006879.1 + 11309 0.69 0.199034
Target:  5'- gGGCAGguGuuguuuuAGauGCAGCgGCCgGCGGa -3'
miRNA:   3'- -CCGUCguCu------UCgcCGUCGaCGG-CGCC- -5'
31608 5' -60.1 NC_006879.1 + 12860 0.72 0.124542
Target:  5'- aGCAGCGGGAGUGGgaggaCAGUcaGCCGCGa -3'
miRNA:   3'- cCGUCGUCUUCGCC-----GUCGa-CGGCGCc -5'
31608 5' -60.1 NC_006879.1 + 12941 0.66 0.325181
Target:  5'- uGCGGCGGAaccAGCGGUcgcGGCUGaCUGUc- -3'
miRNA:   3'- cCGUCGUCU---UCGCCG---UCGAC-GGCGcc -5'
31608 5' -60.1 NC_006879.1 + 13107 0.66 0.309487
Target:  5'- cGCGGCAGAaugagaagAGCGGUgagAGUcacGCCgGCGGc -3'
miRNA:   3'- cCGUCGUCU--------UCGCCG---UCGa--CGG-CGCC- -5'
31608 5' -60.1 NC_006879.1 + 14998 0.68 0.252509
Target:  5'- uGGCGGCGGuggGGCGacgucuccgauGCAGCcGCCucuuGCGGc -3'
miRNA:   3'- -CCGUCGUCu--UCGC-----------CGUCGaCGG----CGCC- -5'
31608 5' -60.1 NC_006879.1 + 15001 0.68 0.252509
Target:  5'- gGGUAgGCAGAAG-GGCuauGC-GCCGCGc -3'
miRNA:   3'- -CCGU-CGUCUUCgCCGu--CGaCGGCGCc -5'
31608 5' -60.1 NC_006879.1 + 15082 0.78 0.045298
Target:  5'- cGGCGGCGGcguuGGCGGCAGC-GCgGCGc -3'
miRNA:   3'- -CCGUCGUCu---UCGCCGUCGaCGgCGCc -5'
31608 5' -60.1 NC_006879.1 + 15121 0.8 0.03178
Target:  5'- cGGCAGCAGccuGGCgGGCAGcCUGUCgGCGGg -3'
miRNA:   3'- -CCGUCGUCu--UCG-CCGUC-GACGG-CGCC- -5'
31608 5' -60.1 NC_006879.1 + 16231 0.73 0.109971
Target:  5'- aGCAcGaCGGGAGCGGCGGCggcgacggguucgGCgGCGGg -3'
miRNA:   3'- cCGU-C-GUCUUCGCCGUCGa------------CGgCGCC- -5'
31608 5' -60.1 NC_006879.1 + 16666 0.69 0.215667
Target:  5'- aGguGCccauGAGCGGCcgcgAGCcgUGCCGCGGa -3'
miRNA:   3'- cCguCGuc--UUCGCCG----UCG--ACGGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.