miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31609 5' -54.5 NC_006879.1 + 25244 0.66 0.638303
Target:  5'- aAGGagauucccaccCCCuacauGUGGAGCUAUCAgCCCCa -3'
miRNA:   3'- -UCC-----------GGGuc---UACCUUGAUAGUaGGGGg -5'
31609 5' -54.5 NC_006879.1 + 24780 0.66 0.626827
Target:  5'- uGGGCCCGccaGGAGCaAUa--CCCCCg -3'
miRNA:   3'- -UCCGGGUcuaCCUUGaUAguaGGGGG- -5'
31609 5' -54.5 NC_006879.1 + 8555 0.66 0.615356
Target:  5'- uGGCCCAGGUGGucauGCgagCGcgcgacUCCUUCg -3'
miRNA:   3'- uCCGGGUCUACCu---UGauaGU------AGGGGG- -5'
31609 5' -54.5 NC_006879.1 + 4905 0.66 0.603901
Target:  5'- aAGcGCCCAGcccGGGGC--UCAUCCCUUc -3'
miRNA:   3'- -UC-CGGGUCua-CCUUGauAGUAGGGGG- -5'
31609 5' -54.5 NC_006879.1 + 12377 0.67 0.547216
Target:  5'- cGGCUCGGAacaUGGAACcGUCcuuuuacUCCgCCCa -3'
miRNA:   3'- uCCGGGUCU---ACCUUGaUAGu------AGG-GGG- -5'
31609 5' -54.5 NC_006879.1 + 28415 0.67 0.547216
Target:  5'- cGGGCCUguAGAgGGGGCUAUCcUCUgUCa -3'
miRNA:   3'- -UCCGGG--UCUaCCUUGAUAGuAGGgGG- -5'
31609 5' -54.5 NC_006879.1 + 9966 0.67 0.536061
Target:  5'- cGuGCCCAccAUGGAGCgcuUUcgCCCCCu -3'
miRNA:   3'- uC-CGGGUc-UACCUUGau-AGuaGGGGG- -5'
31609 5' -54.5 NC_006879.1 + 19948 0.69 0.450297
Target:  5'- cAGGCCUAcccGGcAACUAUCccuAUCCCCUg -3'
miRNA:   3'- -UCCGGGUcuaCC-UUGAUAG---UAGGGGG- -5'
31609 5' -54.5 NC_006879.1 + 4372 0.69 0.430037
Target:  5'- --cCCCAGGUGG-AC-AUgAUCCCCCc -3'
miRNA:   3'- uccGGGUCUACCuUGaUAgUAGGGGG- -5'
31609 5' -54.5 NC_006879.1 + 16294 0.7 0.400678
Target:  5'- cGGGUUgGGaAUGGuAACUGUCuUUCCCCg -3'
miRNA:   3'- -UCCGGgUC-UACC-UUGAUAGuAGGGGG- -5'
31609 5' -54.5 NC_006879.1 + 7683 0.73 0.25322
Target:  5'- gGGGCUU-GGUGGGGCgg-CAUCCCCUu -3'
miRNA:   3'- -UCCGGGuCUACCUUGauaGUAGGGGG- -5'
31609 5' -54.5 NC_006879.1 + 7188 0.76 0.162429
Target:  5'- uGGGCCCGGgcGGAGCUggGUC-UCUCCUc -3'
miRNA:   3'- -UCCGGGUCuaCCUUGA--UAGuAGGGGG- -5'
31609 5' -54.5 NC_006879.1 + 10310 0.76 0.162429
Target:  5'- uGGCCCGGcugGGAGCgc-CGUCCCCa -3'
miRNA:   3'- uCCGGGUCua-CCUUGauaGUAGGGGg -5'
31609 5' -54.5 NC_006879.1 + 4299 1.13 0.000335
Target:  5'- cAGGCCCAGAUGGAACUAUCAUCCCCCa -3'
miRNA:   3'- -UCCGGGUCUACCUUGAUAGUAGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.