miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31613 3' -51 NC_006879.1 + 501 0.66 0.833381
Target:  5'- aGCGcGGAGgaGAAAAcucuacuCGCCGGCa -3'
miRNA:   3'- -UGCuCCUCaaCUUUUuuc----GCGGCCGg -5'
31613 3' -51 NC_006879.1 + 11250 0.66 0.833381
Target:  5'- gACGAGGAGgaucgggacgauUUGGAGGAGGCa--GGCg -3'
miRNA:   3'- -UGCUCCUC------------AACUUUUUUCGcggCCGg -5'
31613 3' -51 NC_006879.1 + 10302 0.66 0.813861
Target:  5'- -aGAGGGGcUGGcccggcuGGGAGCGCCGuCCc -3'
miRNA:   3'- ugCUCCUCaACUu------UUUUCGCGGCcGG- -5'
31613 3' -51 NC_006879.1 + 23186 0.66 0.80377
Target:  5'- gACGAGGAGcuc----GAGCGgUGGCUg -3'
miRNA:   3'- -UGCUCCUCaacuuuuUUCGCgGCCGG- -5'
31613 3' -51 NC_006879.1 + 5758 0.67 0.769089
Target:  5'- -aGAGGGcGUUGGAAAgcaacuuggcgaugGAGCGCagGGUCu -3'
miRNA:   3'- ugCUCCU-CAACUUUU--------------UUCGCGg-CCGG- -5'
31613 3' -51 NC_006879.1 + 34402 0.67 0.761492
Target:  5'- aGCGGGGAG--GAGcGAGGCGg-GGCCg -3'
miRNA:   3'- -UGCUCCUCaaCUUuUUUCGCggCCGG- -5'
31613 3' -51 NC_006879.1 + 11694 0.67 0.761492
Target:  5'- cCGAcg---UGAAGGAGGCGCUGGCUc -3'
miRNA:   3'- uGCUccucaACUUUUUUCGCGGCCGG- -5'
31613 3' -51 NC_006879.1 + 8063 0.67 0.761492
Target:  5'- cCGGGGGGUaGAGGcggcucuGCGCCGGg- -3'
miRNA:   3'- uGCUCCUCAaCUUUuuu----CGCGGCCgg -5'
31613 3' -51 NC_006879.1 + 49 0.67 0.761492
Target:  5'- aGCGGGGAG--GAGcGAGGCGg-GGCCg -3'
miRNA:   3'- -UGCUCCUCaaCUUuUUUCGCggCCGG- -5'
31613 3' -51 NC_006879.1 + 22152 0.67 0.743856
Target:  5'- cCGuGGAGUuucaaagaaugaccaUGAAGGAcgucGGgGCCGGCg -3'
miRNA:   3'- uGCuCCUCA---------------ACUUUUU----UCgCGGCCGg -5'
31613 3' -51 NC_006879.1 + 14889 0.68 0.715662
Target:  5'- aGCGAccgguccGGGGUUGuaccggcGGGCGUCGGCa -3'
miRNA:   3'- -UGCU-------CCUCAACuuuu---UUCGCGGCCGg -5'
31613 3' -51 NC_006879.1 + 3074 0.69 0.6589
Target:  5'- gAUGAGGAG-UGAGGuGAGGgGCgGaGCCa -3'
miRNA:   3'- -UGCUCCUCaACUUU-UUUCgCGgC-CGG- -5'
31613 3' -51 NC_006879.1 + 15702 0.7 0.588597
Target:  5'- gGCGuGGGGUUGccgcugucuAAAGCGauGGCCa -3'
miRNA:   3'- -UGCuCCUCAACuuu------UUUCGCggCCGG- -5'
31613 3' -51 NC_006879.1 + 6403 0.7 0.576961
Target:  5'- gGCGuGGGAGUUGGAAGAgauaguggGGCGuuGGa- -3'
miRNA:   3'- -UGC-UCCUCAACUUUUU--------UCGCggCCgg -5'
31613 3' -51 NC_006879.1 + 3335 0.71 0.542402
Target:  5'- gUGAGG-GUggcgGAAuuugcAGGGGCGaCCGGCCg -3'
miRNA:   3'- uGCUCCuCAa---CUU-----UUUUCGC-GGCCGG- -5'
31613 3' -51 NC_006879.1 + 9291 0.71 0.529897
Target:  5'- gGCGAGGAGgaccacgucuuuGGGC-CCGGCCu -3'
miRNA:   3'- -UGCUCCUCaacuuuu-----UUCGcGGCCGG- -5'
31613 3' -51 NC_006879.1 + 11112 0.71 0.497468
Target:  5'- aGCGAcagGGAGcUGAugcacagccugcAGAGGGCGCUGGCg -3'
miRNA:   3'- -UGCU---CCUCaACU------------UUUUUCGCGGCCGg -5'
31613 3' -51 NC_006879.1 + 8418 0.72 0.486491
Target:  5'- uGCGAcgcauGAGUUGAGAGAAgGCGUugaGGCCg -3'
miRNA:   3'- -UGCUc----CUCAACUUUUUU-CGCGg--CCGG- -5'
31613 3' -51 NC_006879.1 + 1819 0.72 0.443803
Target:  5'- -gGAGGAGaccGAGAAucuGAGaGCCGGCCu -3'
miRNA:   3'- ugCUCCUCaa-CUUUU---UUCgCGGCCGG- -5'
31613 3' -51 NC_006879.1 + 25245 0.74 0.374505
Target:  5'- cCGAGGGG---GAAAAAGCGCgGGUCu -3'
miRNA:   3'- uGCUCCUCaacUUUUUUCGCGgCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.