miRNA display CGI


Results 1 - 19 of 19 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31615 5' -58.5 NC_006879.1 + 17625 0.65 0.471409
Target:  5'- gGGCGaacugcacgagACCG-GGGCucagguacuccgagGCGUccUGCCCGGCg -3'
miRNA:   3'- -CCGU-----------UGGCgCCCG--------------CGCA--AUGGGCUGg -5'
31615 5' -58.5 NC_006879.1 + 11844 0.66 0.464395
Target:  5'- uGC--CCGCgGGGCaCGUUGgCCGGCUg -3'
miRNA:   3'- cCGuuGGCG-CCCGcGCAAUgGGCUGG- -5'
31615 5' -58.5 NC_006879.1 + 17317 0.66 0.448571
Target:  5'- gGGCGGCUGgcagaggcacggcgaCGGGUGCGgacacggguCCCG-CCg -3'
miRNA:   3'- -CCGUUGGC---------------GCCCGCGCaau------GGGCuGG- -5'
31615 5' -58.5 NC_006879.1 + 21220 0.66 0.444661
Target:  5'- -aCAGCCGCGGGaGC----UCCGGCCc -3'
miRNA:   3'- ccGUUGGCGCCCgCGcaauGGGCUGG- -5'
31615 5' -58.5 NC_006879.1 + 33379 0.67 0.415968
Target:  5'- cGCGAUCGCGGaGaGCa--ACCUGACCu -3'
miRNA:   3'- cCGUUGGCGCC-CgCGcaaUGGGCUGG- -5'
31615 5' -58.5 NC_006879.1 + 23693 0.67 0.415968
Target:  5'- uGGCGACCGUGcGCuCGcugaaACCgGACCa -3'
miRNA:   3'- -CCGUUGGCGCcCGcGCaa---UGGgCUGG- -5'
31615 5' -58.5 NC_006879.1 + 16450 0.67 0.379529
Target:  5'- cGCcGCCGCcaucGGUGCcaUACCCGGCg -3'
miRNA:   3'- cCGuUGGCGc---CCGCGcaAUGGGCUGg -5'
31615 5' -58.5 NC_006879.1 + 19004 0.67 0.370759
Target:  5'- -cCAGCC-CGGGUgGCGUcACgCGACCg -3'
miRNA:   3'- ccGUUGGcGCCCG-CGCAaUGgGCUGG- -5'
31615 5' -58.5 NC_006879.1 + 16283 0.68 0.362129
Target:  5'- uGGUAACUGUcuuuccccGGCGUGUUACgCGGCg -3'
miRNA:   3'- -CCGUUGGCGc-------CCGCGCAAUGgGCUGg -5'
31615 5' -58.5 NC_006879.1 + 16218 0.68 0.353639
Target:  5'- cGGCGGCgGCGacggguucggcGGCGgGUU-CCUGACg -3'
miRNA:   3'- -CCGUUGgCGC-----------CCGCgCAAuGGGCUGg -5'
31615 5' -58.5 NC_006879.1 + 9505 0.68 0.353639
Target:  5'- uGCAGCCcuGCGGGgGUucgGCUCGACUc -3'
miRNA:   3'- cCGUUGG--CGCCCgCGcaaUGGGCUGG- -5'
31615 5' -58.5 NC_006879.1 + 15117 0.68 0.337085
Target:  5'- aGCAGCCugGCGGGCagccugucgGCGggcccuCCCGGCg -3'
miRNA:   3'- cCGUUGG--CGCCCG---------CGCaau---GGGCUGg -5'
31615 5' -58.5 NC_006879.1 + 7821 0.69 0.313327
Target:  5'- cGGCAcCCG-GGGCGuCGUcguCCCcACCg -3'
miRNA:   3'- -CCGUuGGCgCCCGC-GCAau-GGGcUGG- -5'
31615 5' -58.5 NC_006879.1 + 25288 0.7 0.256251
Target:  5'- gGGCcuGGCCGCGGGgGCc--GCCCagGACUa -3'
miRNA:   3'- -CCG--UUGGCGCCCgCGcaaUGGG--CUGG- -5'
31615 5' -58.5 NC_006879.1 + 22870 0.71 0.207978
Target:  5'- -uCGGCCGCGGuGCG-GUUgGCCCGGCa -3'
miRNA:   3'- ccGUUGGCGCC-CGCgCAA-UGGGCUGg -5'
31615 5' -58.5 NC_006879.1 + 6334 0.72 0.197204
Target:  5'- aGCAuCCGCgggGGGCGCuGUUACCCcACUu -3'
miRNA:   3'- cCGUuGGCG---CCCGCG-CAAUGGGcUGG- -5'
31615 5' -58.5 NC_006879.1 + 15554 0.72 0.181468
Target:  5'- cGGcCGACCGCucucccgGGGUaaaaacuaccGCGgUGCCCGGCCu -3'
miRNA:   3'- -CC-GUUGGCG-------CCCG----------CGCaAUGGGCUGG- -5'
31615 5' -58.5 NC_006879.1 + 5964 0.77 0.076531
Target:  5'- -aCAACCGCGgcuGGCGCGUgcgcauccUGCCCGACg -3'
miRNA:   3'- ccGUUGGCGC---CCGCGCA--------AUGGGCUGg -5'
31615 5' -58.5 NC_006879.1 + 12774 1.14 0.00013
Target:  5'- cGGCAACCGCGGGCGCGUUACCCGACCa -3'
miRNA:   3'- -CCGUUGGCGCCCGCGCAAUGGGCUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.