miRNA display CGI


Results 1 - 15 of 15 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31618 5' -62.1 NC_006879.1 + 8427 0.66 0.253807
Target:  5'- uGGaGCGAGCGGGccacGGCGaCCUCcGCg- -3'
miRNA:   3'- -UCgCGCUCGUCCu---CCGC-GGAGuCGag -5'
31618 5' -62.1 NC_006879.1 + 20164 0.66 0.247302
Target:  5'- aGGCGUGAGCGGaGuuGGCGUa-CAGCa- -3'
miRNA:   3'- -UCGCGCUCGUC-Cu-CCGCGgaGUCGag -5'
31618 5' -62.1 NC_006879.1 + 24622 0.66 0.234707
Target:  5'- aGGCGCGcuggauGCAGGuGGUuuuucuucggucGCCUCuuccucugaaAGCUCg -3'
miRNA:   3'- -UCGCGCu-----CGUCCuCCG------------CGGAG----------UCGAG- -5'
31618 5' -62.1 NC_006879.1 + 11184 0.66 0.228614
Target:  5'- cAGCGCccucuGCAGGcuGUGCaUCAGCUCc -3'
miRNA:   3'- -UCGCGcu---CGUCCucCGCGgAGUCGAG- -5'
31618 5' -62.1 NC_006879.1 + 21536 0.67 0.205567
Target:  5'- cGCGC-AGCAGcGGGCGUCUUcGUUCu -3'
miRNA:   3'- uCGCGcUCGUCcUCCGCGGAGuCGAG- -5'
31618 5' -62.1 NC_006879.1 + 22225 0.67 0.184559
Target:  5'- gAGgGCGAaggcaccguGguGGAGGUggGCUUCAGCUa -3'
miRNA:   3'- -UCgCGCU---------CguCCUCCG--CGGAGUCGAg -5'
31618 5' -62.1 NC_006879.1 + 20835 0.68 0.160982
Target:  5'- cGGCGCaGGguGGGGGCGaCCUgggGGCUg -3'
miRNA:   3'- -UCGCGcUCguCCUCCGC-GGAg--UCGAg -5'
31618 5' -62.1 NC_006879.1 + 13196 0.68 0.156604
Target:  5'- cGUGCcGGCcacgcuGGAGGCGCCUUAcGUUCc -3'
miRNA:   3'- uCGCGcUCGu-----CCUCCGCGGAGU-CGAG- -5'
31618 5' -62.1 NC_006879.1 + 120 0.69 0.152335
Target:  5'- gGGCGgGAGUgGGGAGGCG-CUUAGUUUu -3'
miRNA:   3'- -UCGCgCUCG-UCCUCCGCgGAGUCGAG- -5'
31618 5' -62.1 NC_006879.1 + 8836 0.69 0.152335
Target:  5'- gGGCGCuuucGAGCAGGAGGUGCgCgacaCGGUc- -3'
miRNA:   3'- -UCGCG----CUCGUCCUCCGCG-Ga---GUCGag -5'
31618 5' -62.1 NC_006879.1 + 22255 0.69 0.144112
Target:  5'- gGGaGgGAGCu-GAGGCGCCUCcuGCUCg -3'
miRNA:   3'- -UCgCgCUCGucCUCCGCGGAGu-CGAG- -5'
31618 5' -62.1 NC_006879.1 + 4865 0.69 0.140154
Target:  5'- gGGCGCuuGCgAGGGuGCGCUUCAGgCUCa -3'
miRNA:   3'- -UCGCGcuCG-UCCUcCGCGGAGUC-GAG- -5'
31618 5' -62.1 NC_006879.1 + 11803 0.71 0.105739
Target:  5'- -cCGCGGGCAGGAGGacuacgugaGCUUCAucagcGCUCu -3'
miRNA:   3'- ucGCGCUCGUCCUCCg--------CGGAGU-----CGAG- -5'
31618 5' -62.1 NC_006879.1 + 10862 0.73 0.074926
Target:  5'- -uCGUGGuGCAGGAgaGGgGCCUCAGCUUa -3'
miRNA:   3'- ucGCGCU-CGUCCU--CCgCGGAGUCGAG- -5'
31618 5' -62.1 NC_006879.1 + 22321 1.08 0.00011
Target:  5'- gAGCGCGAGCAGGAGGCGCCUCAGCUCc -3'
miRNA:   3'- -UCGCGCUCGUCCUCCGCGGAGUCGAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.