miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31619 3' -53.6 NC_006879.1 + 9808 0.66 0.66101
Target:  5'- -cGAUGGUAGUG--GUAGAUGUaGCGg -3'
miRNA:   3'- gaCUGCCGUCACuaCGUCUACAgCGU- -5'
31619 3' -53.6 NC_006879.1 + 24984 0.66 0.637787
Target:  5'- -cGGCGGCAGcgGcgGCGGAguuuuuccUCGCGg -3'
miRNA:   3'- gaCUGCCGUCa-CuaCGUCUac------AGCGU- -5'
31619 3' -53.6 NC_006879.1 + 14999 0.66 0.626161
Target:  5'- aUGGCGGCGGUGggGC-GAcGUCuccgauGCAg -3'
miRNA:   3'- gACUGCCGUCACuaCGuCUaCAG------CGU- -5'
31619 3' -53.6 NC_006879.1 + 20270 0.69 0.479218
Target:  5'- aUGACGccGCGGUGcgGCuGGUGgaugCGCAc -3'
miRNA:   3'- gACUGC--CGUCACuaCGuCUACa---GCGU- -5'
31619 3' -53.6 NC_006879.1 + 12955 0.69 0.468539
Target:  5'- uCUGACGacgcCAGUGcgGCGGAaccagcgGUCGCGg -3'
miRNA:   3'- -GACUGCc---GUCACuaCGUCUa------CAGCGU- -5'
31619 3' -53.6 NC_006879.1 + 10275 0.75 0.205404
Target:  5'- aCUGccgccGCGGCGGUGGUGguGGgcgucugagGUCGCAu -3'
miRNA:   3'- -GAC-----UGCCGUCACUACguCUa--------CAGCGU- -5'
31619 3' -53.6 NC_006879.1 + 22213 0.75 0.194134
Target:  5'- -gGAUGGCGGcGgcGCGGGUGUCGCc -3'
miRNA:   3'- gaCUGCCGUCaCuaCGUCUACAGCGu -5'
31619 3' -53.6 NC_006879.1 + 26029 1.09 0.000707
Target:  5'- gCUGACGGCAGUGAUGCAGAUGUCGCAg -3'
miRNA:   3'- -GACUGCCGUCACUACGUCUACAGCGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.