Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 31621 | 5' | -57.8 | NC_006879.1 | + | 14049 | 0.66 | 0.428558 |
|
Target: 5'- cGCCucgaaucucUCGUCCCUGCGcc-UCCGCCu -3' miRNA: 3'- -CGGcc-------AGCGGGGACGUuuaAGGCGGu -5' |
|||||||
| 31621 | 5' | -57.8 | NC_006879.1 | + | 7759 | 0.66 | 0.417911 |
|
Target: 5'- -aCGGUggggacgacgaCGCCCCgggugccGCAAGUccagaucUCCGCCAc -3' miRNA: 3'- cgGCCA-----------GCGGGGa------CGUUUA-------AGGCGGU- -5' |
|||||||
| 31621 | 5' | -57.8 | NC_006879.1 | + | 22525 | 0.67 | 0.372506 |
|
Target: 5'- cGCCGGUCagGCCCCUcCAGAUccUCgGgCGg -3' miRNA: 3'- -CGGCCAG--CGGGGAcGUUUA--AGgCgGU- -5' |
|||||||
| 31621 | 5' | -57.8 | NC_006879.1 | + | 16090 | 0.68 | 0.338009 |
|
Target: 5'- aGCgGGUCGCCUCUGa------CGCCGa -3' miRNA: 3'- -CGgCCAGCGGGGACguuuaagGCGGU- -5' |
|||||||
| 31621 | 5' | -57.8 | NC_006879.1 | + | 9801 | 0.7 | 0.248801 |
|
Target: 5'- aGUCGGcUgGCCCCUGUAccGAgaaCCGCCu -3' miRNA: 3'- -CGGCC-AgCGGGGACGU--UUaa-GGCGGu -5' |
|||||||
| 31621 | 5' | -57.8 | NC_006879.1 | + | 3268 | 1.1 | 0.000265 |
|
Target: 5'- gGCCGGUCGCCCCUGCAAAUUCCGCCAc -3' miRNA: 3'- -CGGCCAGCGGGGACGUUUAAGGCGGU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home