miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31625 5' -55.4 NC_006879.1 + 100 0.66 0.552556
Target:  5'- -cGCGgGGUggCGCGAgGGCGGGGCGg- -3'
miRNA:   3'- guCGUgUCG--GCGCUgUUGCUCUGCaa -5'
31625 5' -55.4 NC_006879.1 + 12818 0.66 0.519153
Target:  5'- cUAGC-CGGCCGCaGCAAgGGGuCGUUc -3'
miRNA:   3'- -GUCGuGUCGGCGcUGUUgCUCuGCAA- -5'
31625 5' -55.4 NC_006879.1 + 16225 0.67 0.486576
Target:  5'- aCGGgaGCGGCgGCGGCGACGGGuucgGCGg- -3'
miRNA:   3'- -GUCg-UGUCGgCGCUGUUGCUC----UGCaa -5'
31625 5' -55.4 NC_006879.1 + 7863 0.67 0.475932
Target:  5'- gAGgGCGGCCGCGcugagguCGGCGGGaaGCGUUu -3'
miRNA:   3'- gUCgUGUCGGCGCu------GUUGCUC--UGCAA- -5'
31625 5' -55.4 NC_006879.1 + 8845 0.67 0.459147
Target:  5'- gGGCACGGguuccuccggcagcuCUGCGACGgggACGGGGCGg- -3'
miRNA:   3'- gUCGUGUC---------------GGCGCUGU---UGCUCUGCaa -5'
31625 5' -55.4 NC_006879.1 + 17234 0.68 0.444722
Target:  5'- gGGgGCGGCgGUGGCGGCGGGGgGa- -3'
miRNA:   3'- gUCgUGUCGgCGCUGUUGCUCUgCaa -5'
31625 5' -55.4 NC_006879.1 + 11583 0.69 0.36752
Target:  5'- aCAGCAaGGCCauccGCcGCGACGAGGCGg- -3'
miRNA:   3'- -GUCGUgUCGG----CGcUGUUGCUCUGCaa -5'
31625 5' -55.4 NC_006879.1 + 462 0.7 0.307927
Target:  5'- -cGCGCuGCCGCGAUGAggcugguuccCGAGAUGUa -3'
miRNA:   3'- guCGUGuCGGCGCUGUU----------GCUCUGCAa -5'
31625 5' -55.4 NC_006879.1 + 1773 0.73 0.211477
Target:  5'- gGGCGCAGCCuccGCGGCuggacCGAGugGUg -3'
miRNA:   3'- gUCGUGUCGG---CGCUGuu---GCUCugCAa -5'
31625 5' -55.4 NC_006879.1 + 15022 0.75 0.156819
Target:  5'- uCAGCACGGCCcuggcugccagcaugGCGGCggUGGGGCGa- -3'
miRNA:   3'- -GUCGUGUCGG---------------CGCUGuuGCUCUGCaa -5'
31625 5' -55.4 NC_006879.1 + 7912 0.75 0.154585
Target:  5'- uCAGCGCGGCCGCccucgacucccugGACAGCGGGcagcuGCGUc -3'
miRNA:   3'- -GUCGUGUCGGCG-------------CUGUUGCUC-----UGCAa -5'
31625 5' -55.4 NC_006879.1 + 10761 1.04 0.000999
Target:  5'- gCAGCACAGCCGCGACAACGAGACGUUc -3'
miRNA:   3'- -GUCGUGUCGGCGCUGUUGCUCUGCAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.