Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31626 | 3' | -62.9 | NC_006879.1 | + | 22053 | 0.66 | 0.242039 |
Target: 5'- aCAcGGCGGUaGAgGgGCCc-UCGCCGGCc -3' miRNA: 3'- -GUuCCGCCA-CU-CgCGGucGGCGGCCG- -5' |
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31626 | 3' | -62.9 | NC_006879.1 | + | 10259 | 0.66 | 0.227515 |
Target: 5'- --uGGUGGUGGGCGUCugaggucgcaucuGCCGCa-GCa -3' miRNA: 3'- guuCCGCCACUCGCGGu------------CGGCGgcCG- -5' |
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31626 | 3' | -62.9 | NC_006879.1 | + | 17244 | 0.66 | 0.229883 |
Target: 5'- -cGGGCGcGUGGGgGgCGGCgGUggCGGCg -3' miRNA: 3'- guUCCGC-CACUCgCgGUCGgCG--GCCG- -5' |
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31626 | 3' | -62.9 | NC_006879.1 | + | 24663 | 0.66 | 0.235896 |
Target: 5'- gGGGGCGucGGGgGCCggggcuucGGCUGUCGGCu -3' miRNA: 3'- gUUCCGCcaCUCgCGG--------UCGGCGGCCG- -5' |
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31626 | 3' | -62.9 | NC_006879.1 | + | 14901 | 0.67 | 0.186327 |
Target: 5'- gGAGGCGGcGcuAGCGaCCGGuCCGggguuguaCCGGCg -3' miRNA: 3'- gUUCCGCCaC--UCGC-GGUC-GGC--------GGCCG- -5' |
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31626 | 3' | -62.9 | NC_006879.1 | + | 4755 | 0.67 | 0.201208 |
Target: 5'- gUAGGGCaccagccGGUGGGCGUCcagGGCCGCgaGGg -3' miRNA: 3'- -GUUCCG-------CCACUCGCGG---UCGGCGg-CCg -5' |
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31626 | 3' | -62.9 | NC_006879.1 | + | 5881 | 0.67 | 0.208755 |
Target: 5'- aCAcGGCGGUgcgcucgucgggcagGAugcgcacGCGCCAGCCG-CGGUu -3' miRNA: 3'- -GUuCCGCCA---------------CU-------CGCGGUCGGCgGCCG- -5' |
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31626 | 3' | -62.9 | NC_006879.1 | + | 11390 | 0.68 | 0.176637 |
Target: 5'- ---cGCGGUG-GCcCCGuCCGCCGGCc -3' miRNA: 3'- guucCGCCACuCGcGGUcGGCGGCCG- -5' |
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31626 | 3' | -62.9 | NC_006879.1 | + | 14995 | 0.69 | 0.149803 |
Target: 5'- --cGGCGGUGGG-GCgacgucuccgaugCAGCCGCCucuugcGGCg -3' miRNA: 3'- guuCCGCCACUCgCG-------------GUCGGCGG------CCG- -5' |
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31626 | 3' | -62.9 | NC_006879.1 | + | 9194 | 0.71 | 0.10758 |
Target: 5'- uGAGGaCGGUGGGcCGCUGGggggcguCCGCgGGCa -3' miRNA: 3'- gUUCC-GCCACUC-GCGGUC-------GGCGgCCG- -5' |
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31626 | 3' | -62.9 | NC_006879.1 | + | 9736 | 0.71 | 0.104909 |
Target: 5'- gGAGGCGGUucucgguacaGGG-GCCAGCCGacugUGGCg -3' miRNA: 3'- gUUCCGCCA----------CUCgCGGUCGGCg---GCCG- -5' |
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31626 | 3' | -62.9 | NC_006879.1 | + | 13120 | 0.74 | 0.054603 |
Target: 5'- gAAGaGCGGUGAGaGUCAcGCCGgCGGCg -3' miRNA: 3'- gUUC-CGCCACUCgCGGU-CGGCgGCCG- -5' |
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31626 | 3' | -62.9 | NC_006879.1 | + | 11077 | 1.11 | 0.000063 |
Target: 5'- aCAAGGCGGUGAGCGCCAGCCGCCGGCg -3' miRNA: 3'- -GUUCCGCCACUCGCGGUCGGCGGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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