miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31627 3' -56.5 NC_006879.1 + 4683 0.66 0.529413
Target:  5'- cUUGAaaagaUGCCCauGGCCGACGGCc- -3'
miRNA:   3'- aAACUgg---ACGGGcuUCGGCUGCUGcc -5'
31627 3' -56.5 NC_006879.1 + 7834 0.66 0.486657
Target:  5'- --gGACgcagCUGCCCGcuguccaggGAGUCGAgGGCGGc -3'
miRNA:   3'- aaaCUG----GACGGGC---------UUCGGCUgCUGCC- -5'
31627 3' -56.5 NC_006879.1 + 15174 0.67 0.473112
Target:  5'- --cGACCUcCCCGAaguuagaagauccaAGCUgcgaaGACGGCGGu -3'
miRNA:   3'- aaaCUGGAcGGGCU--------------UCGG-----CUGCUGCC- -5'
31627 3' -56.5 NC_006879.1 + 20921 0.67 0.443604
Target:  5'- --aGGCCgugGCCCGuucgaugcgcuGCCGGUGGCGGc -3'
miRNA:   3'- aaaCUGGa--CGGGCuu---------CGGCUGCUGCC- -5'
31627 3' -56.5 NC_006879.1 + 17314 0.67 0.425818
Target:  5'- --cGGCUgGCa-GAGGCaCGGCGACGGg -3'
miRNA:   3'- aaaCUGGaCGggCUUCG-GCUGCUGCC- -5'
31627 3' -56.5 NC_006879.1 + 16653 0.68 0.406563
Target:  5'- --cGGCCgcgagccgUGCCgCGGAGCCaGCGACGu -3'
miRNA:   3'- aaaCUGG--------ACGG-GCUUCGGcUGCUGCc -5'
31627 3' -56.5 NC_006879.1 + 23232 0.68 0.406563
Target:  5'- --cGAgCUcCUCGucGCUGACGACGGg -3'
miRNA:   3'- aaaCUgGAcGGGCuuCGGCUGCUGCC- -5'
31627 3' -56.5 NC_006879.1 + 22135 0.68 0.387864
Target:  5'- -aUGACCaUGaaggacgUCGggGCCGGCGAgGGc -3'
miRNA:   3'- aaACUGG-ACg------GGCuuCGGCUGCUgCC- -5'
31627 3' -56.5 NC_006879.1 + 8678 0.68 0.387864
Target:  5'- -aUGGCCUcGUa-GAAGUCGACGGCGa -3'
miRNA:   3'- aaACUGGA-CGggCUUCGGCUGCUGCc -5'
31627 3' -56.5 NC_006879.1 + 14887 0.71 0.252858
Target:  5'- --cGACCgGUCCGggGuuGuacCGGCGGg -3'
miRNA:   3'- aaaCUGGaCGGGCuuCggCu--GCUGCC- -5'
31627 3' -56.5 NC_006879.1 + 8140 0.76 0.126708
Target:  5'- -aUGACgaGCCCGGAgacuGCUGGCGugGGc -3'
miRNA:   3'- aaACUGgaCGGGCUU----CGGCUGCugCC- -5'
31627 3' -56.5 NC_006879.1 + 6387 0.76 0.112951
Target:  5'- --gGAUCUGCCUGAAGauGGCGugGGa -3'
miRNA:   3'- aaaCUGGACGGGCUUCggCUGCugCC- -5'
31627 3' -56.5 NC_006879.1 + 12537 1.07 0.000579
Target:  5'- gUUUGACCUGCCCGAAGCCGACGACGGc -3'
miRNA:   3'- -AAACUGGACGGGCUUCGGCUGCUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.