Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31629 | 3' | -51.3 | NC_006879.1 | + | 22097 | 0.66 | 0.815893 |
Target: 5'- uACCGCCGUguUGGUGAAGAac--CCCGa -3' miRNA: 3'- -UGGUGGCA--GUCACUUUUgcaaGGGCg -5' |
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31629 | 3' | -51.3 | NC_006879.1 | + | 7501 | 0.66 | 0.8323 |
Target: 5'- uGCCACCaGUUggaggaaugGGUGuuGAUGUggugaaaguagaagUCCCGCc -3' miRNA: 3'- -UGGUGG-CAG---------UCACuuUUGCA--------------AGGGCG- -5' |
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31629 | 3' | -51.3 | NC_006879.1 | + | 10273 | 0.67 | 0.741361 |
Target: 5'- uGCCGCCGcggCGGUGGugguGGGCGUcugaggucgcaucUgCCGCa -3' miRNA: 3'- -UGGUGGCa--GUCACU----UUUGCA-------------AgGGCG- -5' |
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31629 | 3' | -51.3 | NC_006879.1 | + | 21488 | 0.67 | 0.785462 |
Target: 5'- gGCCuuCCGUCAaUGGAGGaGUUCCUGg -3' miRNA: 3'- -UGGu-GGCAGUcACUUUUgCAAGGGCg -5' |
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31629 | 3' | -51.3 | NC_006879.1 | + | 11462 | 0.67 | 0.753434 |
Target: 5'- gGCCGCCGccCAGUcaucGGAGGCGgucacgCCCGa -3' miRNA: 3'- -UGGUGGCa-GUCA----CUUUUGCaa----GGGCg -5' |
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31629 | 3' | -51.3 | NC_006879.1 | + | 13455 | 0.68 | 0.686024 |
Target: 5'- cGCUgggGCgGUCAGcUGAAAACcaUCCUGCa -3' miRNA: 3'- -UGG---UGgCAGUC-ACUUUUGcaAGGGCG- -5' |
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31629 | 3' | -51.3 | NC_006879.1 | + | 6754 | 0.69 | 0.671047 |
Target: 5'- aGCgGCCuuucugagagagguGUgGGUGAGGGCGaaggugUCCCGCa -3' miRNA: 3'- -UGgUGG--------------CAgUCACUUUUGCa-----AGGGCG- -5' |
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31629 | 3' | -51.3 | NC_006879.1 | + | 5924 | 0.7 | 0.570324 |
Target: 5'- cACCGCCGUguuccccgAGUGGcgguGCGUggCCCGCg -3' miRNA: 3'- -UGGUGGCAg-------UCACUuu--UGCAa-GGGCG- -5' |
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31629 | 3' | -51.3 | NC_006879.1 | + | 12703 | 0.7 | 0.604922 |
Target: 5'- uCCGCCaG-CAGUGGucggguAACGcgCCCGCg -3' miRNA: 3'- uGGUGG-CaGUCACUu-----UUGCaaGGGCG- -5' |
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31629 | 3' | -51.3 | NC_006879.1 | + | 12419 | 0.71 | 0.536229 |
Target: 5'- uCCgaGCCGUCAugucuaaagccGUGGAAGCGguggcgcccUCCCGCa -3' miRNA: 3'- uGG--UGGCAGU-----------CACUUUUGCa--------AGGGCG- -5' |
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31629 | 3' | -51.3 | NC_006879.1 | + | 21466 | 0.73 | 0.439129 |
Target: 5'- uGCCGCCcUCGGUGuAGAAUag-CCCGCa -3' miRNA: 3'- -UGGUGGcAGUCAC-UUUUGcaaGGGCG- -5' |
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31629 | 3' | -51.3 | NC_006879.1 | + | 14449 | 1.11 | 0.001148 |
Target: 5'- uACCACCGUCAGUGAAAACGUUCCCGCc -3' miRNA: 3'- -UGGUGGCAGUCACUUUUGCAAGGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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