miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31629 5' -59.9 NC_006879.1 + 4969 0.66 0.324369
Target:  5'- ---aGGGACUCgGCCGCgugucccuggcGCGCAGCu -3'
miRNA:   3'- agugCCUUGGGaCGGCGa----------CGCGUCGu -5'
31629 5' -59.9 NC_006879.1 + 16650 0.66 0.324369
Target:  5'- cCGC-GAGCCgUGCCGCggaGC-CAGCGa -3'
miRNA:   3'- aGUGcCUUGGgACGGCGa--CGcGUCGU- -5'
31629 5' -59.9 NC_006879.1 + 23665 0.66 0.308587
Target:  5'- cCACaGGGCgC-GCCGCUG-GCGGCAg -3'
miRNA:   3'- aGUGcCUUGgGaCGGCGACgCGUCGU- -5'
31629 5' -59.9 NC_006879.1 + 23776 0.67 0.293397
Target:  5'- cUC-CGGGAUCUUGCCcgccaugaGCUGCGC-GCu -3'
miRNA:   3'- -AGuGCCUUGGGACGG--------CGACGCGuCGu -5'
31629 5' -59.9 NC_006879.1 + 15961 0.67 0.286023
Target:  5'- -aACGGaAACCCUGCCGCgaucgGUaccagggaaGUGGCGu -3'
miRNA:   3'- agUGCC-UUGGGACGGCGa----CG---------CGUCGU- -5'
31629 5' -59.9 NC_006879.1 + 2210 0.67 0.25799
Target:  5'- cCAUGGAGCUCUGgUGCagGUGCAGa- -3'
miRNA:   3'- aGUGCCUUGGGACgGCGa-CGCGUCgu -5'
31629 5' -59.9 NC_006879.1 + 15744 0.67 0.25799
Target:  5'- cUCACGGGGagcaCCUGCUGCaGCGUcacagguuugaGGCu -3'
miRNA:   3'- -AGUGCCUUg---GGACGGCGaCGCG-----------UCGu -5'
31629 5' -59.9 NC_006879.1 + 14568 0.68 0.226155
Target:  5'- gUCACGcgcuGAACUccaCUGauaCUGCUGCGCAGCGg -3'
miRNA:   3'- -AGUGC----CUUGG---GAC---GGCGACGCGUCGU- -5'
31629 5' -59.9 NC_006879.1 + 10827 0.68 0.219614
Target:  5'- gUCGCGGAACgUCUcguugucGCgGCUGUGCuGCAc -3'
miRNA:   3'- -AGUGCCUUG-GGA-------CGgCGACGCGuCGU- -5'
31629 5' -59.9 NC_006879.1 + 10807 0.7 0.182184
Target:  5'- aUCGCGGAGCCCgaggGUCGCUG-GCu--- -3'
miRNA:   3'- -AGUGCCUUGGGa---CGGCGACgCGucgu -5'
31629 5' -59.9 NC_006879.1 + 15146 0.71 0.141913
Target:  5'- -gACGGGAgUCCgagUGCCGgUGCGCAGCc -3'
miRNA:   3'- agUGCCUU-GGG---ACGGCgACGCGUCGu -5'
31629 5' -59.9 NC_006879.1 + 14190 0.73 0.100877
Target:  5'- cCACGGAcgugaCCUGCgGCU-CGCAGCAa -3'
miRNA:   3'- aGUGCCUug---GGACGgCGAcGCGUCGU- -5'
31629 5' -59.9 NC_006879.1 + 21167 0.78 0.040656
Target:  5'- gUCAUgGGAGCCCUGCaGCUgGUGCGGCAg -3'
miRNA:   3'- -AGUG-CCUUGGGACGgCGA-CGCGUCGU- -5'
31629 5' -59.9 NC_006879.1 + 14484 1.09 0.000166
Target:  5'- aUCACGGAACCCUGCCGCUGCGCAGCAg -3'
miRNA:   3'- -AGUGCCUUGGGACGGCGACGCGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.